dzerbino velvet issues - Githubissues

dzerbino / velvet

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

https://europepmc.org/article/pmc/2336801

GNU General Public License v2.0

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issues

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Segmentation Fault (velveth) with Paired End Illumina Data

#57 hollybpalk opened 1 year ago
5
velveth results depending on `OMP_NUM_THREADS` and stalling if `OMP_THREAD_LIMIT=1`

#56 bernt-matthias opened 2 years ago
3
MAXKMERLENGTH = 255

#55 joseboas closed 2 years ago
3
velveth: Word length 33 greater than max allowed value (31).

#54 vasudhajain29 opened 2 years ago
1
Could you help me ? I'm confused with velvet which need a large physical memory.

#53 jzhou65 opened 3 years ago
3
scaffold N50 versus contig N50

#52 rainbow218 closed 3 years ago
3
Contig length

#51 azrasid closed 3 years ago
2
Reference as input to velvet is giving smaller contig length than without reference.

#50 azrasid closed 3 years ago
6
short read and reference as input to velvet

#49 azrasid closed 3 years ago
1
How to choose kmer length?

#48 XMTian closed 3 years ago
1
cannot run velvet (1.2.10)

#47 memaMJ closed 3 years ago
1
Segmentation fault for velveth on short paired separate reads

#46 spencel closed 3 years ago
2
Memory scaling

#45 gmfricke closed 5 years ago
2
Where can I download Velvet 1.2.08_maxkmer101

#44 ShuChen1986 closed 5 years ago
1
Please add release tags

#43 tillea closed 6 years ago
1
error in increasing Kmer lenght from 31 to 51

#42 shrutidabral closed 6 years ago
2
how to extract Unmatched reads paired and Unmatched reads unpaired

#41 shrutidabral closed 6 years ago
3
rerunning velvetg

#40 Koorvo closed 6 years ago
1
kmerge option for oases_pipeline.py

#39 minor7b5 closed 6 years ago
1
velvetg: Cannot allocate memory

#38 rominahenriques closed 5 years ago
2
Velvetg failed at k =25

#37 MochiGirl closed 6 years ago
1
Right sequence file has too many reads

#36 madmolecularman closed 6 years ago
3
Segmentation Fault

#35 aakashsur closed 6 years ago
4
Velveth Killed

#34 aakashsur closed 7 years ago
5
Autotool the build system

#33 SoapGentoo closed 7 years ago
1
Running into a segmentation fault

#32 sagnikbanerjee15 closed 6 years ago
1
MAXKMERLENGTH parameter does not produce any effect on velvelth

#31 GiBacci closed 6 years ago
8
velveth k range specification [kmin,kmax) is a bit confusing

#30 sammyjava closed 9 years ago
1
"not seem to be in FastQ format" error

#29 homopolymer closed 9 years ago
6
FIx SCAFFOLD include gaurd

#28 glennsb closed 9 years ago
1
isCreateBinary() should not be inline

#27 jmarshall closed 10 years ago
0
about VelvetOptimiser-2.2.4

#26 PEHGP closed 9 years ago
0
Packaging error in latest velvet_1.2.08.tgz

#25 mhowison closed 11 years ago
1
add tags for versions

#24 eparejatobes closed 9 years ago
4
make shouldn't signal error if pdflatex not found

#23 eparejatobes closed 10 years ago
3
Small bug in velveth parameters

#22 maasha closed 11 years ago
1
Regression test scripts

#21 nathanweeks closed 11 years ago
0
directory variable has the wrong content

#20 thakki closed 12 years ago
8
obj/autoOpen.o not found while compiling debug version

#19 thakki closed 12 years ago
2
Add a '-fmtAuto' option to velveth

#18 drpowell closed 12 years ago
0
regression test fails when OpenMP enabled

#17 nathanweeks closed 12 years ago
2
Update MetaVelvet-1.1.01 -> MetaVelvet-1.2.01

#16 hacchy closed 12 years ago
0
Add '-separate' option for reading paired reads from separate files

#15 drpowell closed 12 years ago
1
change type of nucleotide offset var to account for more mappings

#14 dsoper closed 12 years ago
0
ref masks for binary writer

#13 dsoper closed 12 years ago
0
Strict columbus

#12 dsoper closed 12 years ago
0
change categories as needed in binary writer for SAM/BAM

#11 dsoper closed 12 years ago
0
only write mapping info if sequence was written

#10 dsoper closed 12 years ago
0
binary writer fix with ref mappings

#9 dsoper closed 12 years ago
0
support multiple ref mappings in CnyUnifiedSeq

#8 dsoper closed 12 years ago
0