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eeg-ebe
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HaplowebMaker
Automatic implementation of haplowebs and conspecificity matrices.
Apache License 2.0
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Rightmost names do not display properly
#43
jflot
opened
3 years ago
0
Make clearer the option that makes constant the sizes of all circles and curves
#42
jflot
opened
3 years ago
0
Add the possibility to filter out individuals or sequences that contain ambiguous characters
#41
jflot
opened
3 years ago
0
Add an "export color file" button
#40
jflot
opened
3 years ago
0
Add warning "No color file given!" when users click on "Color curves according to color file" but there is no color file.
#39
jflot
opened
4 years ago
0
keep the order the taxa in the user data for the partition matrix then for the conspecificity matrix
#38
jflot
closed
4 years ago
1
Speed up the computation of the partitions matrix when no haploweb is required
#37
jflot
opened
6 years ago
0
Count separately the number of haplotypes and of median vectors in the info box
#36
jflot
closed
4 years ago
1
Button "color by individual" to toggle between pie charts and FFR colors
#35
jflot
closed
4 years ago
1
Improve shortcut list
#34
jflot
opened
6 years ago
1
Save zoom factor
#33
jflot
opened
6 years ago
1
Add support for weights in CoMa
#32
jflot
closed
4 years ago
1
Separate HaplowebMaker and CoMa
#31
jflot
opened
6 years ago
0
Order pie charts sectors according to their size
#30
jflot
closed
4 years ago
1
Add name information directly on the haploweb
#29
jflot
closed
4 years ago
2
GUI improvements
#28
quant42
closed
4 years ago
3
Different additional plots
#27
quant42
opened
6 years ago
0
Add an alignment editor to the graphical version
#26
jflot
opened
6 years ago
0
Find a way to distribute a command-line version of HaplowebMaker
#25
jflot
closed
4 years ago
2
Authorize regular expressions to colour the haplotypes
#24
jflot
opened
6 years ago
0
Add possibility to filter out the most variable positions in the input alignments
#23
jflot
opened
6 years ago
0
Code cleanup
#22
quant42
closed
4 years ago
3
Add button to toggle display of median vectors
#21
jflot
closed
6 years ago
0
Rotate pie charts
#20
jflot
opened
6 years ago
1
Assign colors to connections
#19
jflot
opened
6 years ago
2
implement optional behaviors regarding indels
#18
jflot
opened
6 years ago
2
add an option to remove singletons
#17
jflot
closed
6 years ago
3
Remove duplicate "Circles ++" and "Circles --" buttons
#16
jflot
closed
6 years ago
0
Do not distinguish upper case and lower case in the sequences, but distinguish them in the headers
#15
jflot
closed
6 years ago
0
Add buttons to increase line thickness and curve thickness
#14
jflot
closed
6 years ago
1
Tests
#13
quant42
opened
6 years ago
1
Documentation
#12
quant42
closed
4 years ago
0
Translate buttons into the different languages
#11
quant42
closed
4 years ago
1
allow users to choose a different delimiter
#10
jflot
closed
6 years ago
0
add some tests to check the validity of the input file
#9
jflot
closed
6 years ago
0
Allow users to choose between presence/absence or inferred genotypes
#8
jflot
closed
4 years ago
6
Choose whether circle area or circle diameter should be proportional to the number of individuals
#7
jflot
closed
6 years ago
1
Input a list of individuals + colours
#6
jflot
closed
6 years ago
4
Automatical colouring of FFRs on the network
#5
jflot
closed
6 years ago
0
Pie charts
#4
quant42
closed
6 years ago
0
CoMa
#3
quant42
closed
6 years ago
0
Number of individuals
#2
quant42
closed
6 years ago
0
Hyplotype identification in the network
#1
quant42
closed
6 years ago
3