elizabethng predator-diets issues

elizabethng / predator-diets

Code used to perform the analyses in "Predator stomach contents can provide accurate indices of prey biomass"

https://academic.oup.com/icesjms/article/78/3/1146/6145864

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Overlap calculations

#56 elizabethng closed 3 years ago
0
Development branch broken run models

#55 elizabethng opened 4 years ago
0
Development

#54 elizabethng closed 4 years ago
0
Development

#53 elizabethng closed 4 years ago
0
Optimization hangs with ADREPORT(D_gcy) and REML == TRUE

#52 elizabethng opened 4 years ago
2
Get covariate error bounds

#51 elizabethng closed 4 years ago
2
Development

#50 elizabethng closed 5 years ago
0
Run two-species models

#49 elizabethng opened 5 years ago
1
plot_overlap_and_diet

#48 elizabethng closed 4 years ago
0
Need to use same grid/mesh for fitting

#47 elizabethng closed 4 years ago
1
Fix species (not pdcomnam) and season (not myseason) names in data

#46 elizabethng closed 4 years ago
1
Update VAST version

#45 elizabethng closed 4 years ago
0
Get error bounds for overlap index

#44 elizabethng opened 5 years ago
3
Ideas for speeding up model runs

#43 elizabethng closed 4 years ago
0
Plot overlap index on unstandardized scale

#42 elizabethng closed 4 years ago
1
Add offset for trawl data

#41 elizabethng opened 5 years ago
0
Split model selection into two phases: random effects and covariates

#40 elizabethng closed 5 years ago
1
Add spatial only model to config file

#39 elizabethng closed 5 years ago
4
Output all parameter estimates

#38 elizabethng closed 4 years ago
1
Development

#37 elizabethng closed 5 years ago
0
Check area weighting of index calculation

#36 elizabethng opened 5 years ago
1
Update model selection and validation

#35 elizabethng closed 5 years ago
1
Consolidate Dropbox output

#34 elizabethng closed 5 years ago
1
Double-check covariate calculations

#33 elizabethng closed 5 years ago
1
Find covariate parameters in output

#32 elizabethng closed 5 years ago
0
Ensure that overlap metrics are calculated for same knots

#31 elizabethng closed 5 years ago
1
Development

#30 elizabethng closed 5 years ago
0
Make results file location easier to access

#29 elizabethng closed 5 years ago
3
Fix error from saving par in output

#28 elizabethng closed 5 years ago
1
Change how VAST output objects are saved

#27 elizabethng closed 5 years ago
2
Revisit spatial component of second linear predictor

#26 elizabethng closed 4 years ago
1
Mismatch between knot locations, sampling extent, and prediction area

#25 elizabethng opened 5 years ago
3
Pass list of plot years from process_data

#24 elizabethng closed 5 years ago
3
Check ObsModel specification

#23 elizabethng closed 5 years ago
1
Why does silver hake fall index fail?

#22 elizabethng closed 5 years ago
1
Fix calculation of median sizecat

#21 elizabethng closed 4 years ago
1
Modify process data to include covariates and add functional programming model runs

#20 elizabethng closed 5 years ago
0
Merge pull request #9 from elizabethng/master

#19 elizabethng closed 5 years ago
0
Can't plot residuals maps

#18 elizabethng closed 5 years ago
1
Run models workflow stash

#17 elizabethng closed 5 years ago
0
Process output and figures

#16 elizabethng closed 5 years ago
5
Inspect and update input/output file names

#15 elizabethng closed 5 years ago
3
Add check for missing years in data creation step

#14 elizabethng closed 5 years ago
1
Check that dat_preds_all.rds has EMPTY stomachs removed

#13 elizabethng closed 5 years ago
1
strata.limits argument doesn't appear to change extrapolation grid

#12 elizabethng opened 5 years ago
1
Check length data in un-formatted consumption data

#11 elizabethng opened 5 years ago
0
Write VAST inputs as functions

#10 elizabethng closed 5 years ago
3
getting sorted after talk

#9 elizabethng closed 5 years ago
0
Development

#8 elizabethng closed 5 years ago
0
Error: cannot allocate vector of size 10.7 Gb

#7 elizabethng closed 5 years ago
1