epiverse-trace serofoi issues

epiverse-trace / serofoi

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

https://epiverse-trace.github.io/serofoi/

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issues

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codecov online test coverage report is not automatically updated

#239 ntorresd opened 3 days ago
0
Add option to visualise the prior distribution

#238 ntorresd opened 4 days ago
0
Unit test is missing for functions in summarise_seromodel.R

#237 ntorresd opened 4 days ago
0
Unit test missing for `add_age_group_to_serosurvey()`

#236 ntorresd closed 4 days ago
0
Add unit tests for validation functions

#235 ntorresd closed 4 days ago
0
Unit testing is missing for exceptions in validation.R

#234 ntorresd closed 4 days ago
0
Unit test is missing for `simulate_serosurvey_general_model()`

#233 ntorresd opened 6 days ago
0
Add test for functions in build_stan_data.R

#232 ntorresd closed 5 days ago
0
Add export tag to `plot_rhats()`

#231 ntorresd closed 6 days ago
1
Test coverage percentage needs to be increased

#230 ntorresd opened 6 days ago
0
Fix mismatch between README and website

#229 ntorresd closed 1 week ago
0
Fix mismatch between README and website

#228 ntorresd closed 1 week ago
0
Fix mismatch between README and website

#227 ntorresd closed 1 week ago
0
Export tag is missing for `plot_rhats`

#226 ntorresd closed 6 days ago
0
Add missing `return()` call to all functions

#225 ntorresd opened 1 week ago
0
Mismatch with pkgdown README installation instructions?

#224 adamkucharski closed 6 days ago
2
215 add unit test for visualisation functionalities

#223 jpavlich closed 6 days ago
3
Improve error messages for `plot_foi_estimates` and `plot_rhats`

#222 jpavlich opened 2 weeks ago
2
Add structure to `foi_index` across the package

#221 ntorresd closed 1 week ago
0
Unit testing for `get_foi_index()` is missing

#220 ntorresd closed 1 week ago
1
Unifying stan files for models with and without seroreversion

#219 ntorresd opened 1 month ago
0
Data simulation examples need to be fixed

#218 ntorresd closed 1 month ago
0
Fix simulate_serosurvey unit testing and examples

#217 ntorresd closed 1 month ago
1
Unit testing for data simulation functions is failing

#216 ntorresd closed 1 month ago
0
Add unit test for visualisation functionalities

#215 ntorresd closed 6 days ago
1
Unit testing for stan functions

#214 ntorresd opened 1 month ago
0
Add unit test for `fit_seromodel()`

#213 ntorresd closed 1 month ago
0
Adding VPH use case to Use Cases article

#212 ntorresd opened 1 month ago
0
New `fit_seromodel()` unit test

#211 ntorresd closed 1 week ago
1
Unit testing is missing for main functionalities of the package

#210 ntorresd closed 4 days ago
0
(i208)fix: correct time indexation in time-log-foi model

#209 ntorresd closed 1 month ago
1
Misspecification of time indexation in log-scale time-varying Stan model

#208 ntorresd closed 1 month ago
1
Dev

#207 ntorresd opened 1 month ago
1
Adding structure to `foi_index` in `fit_seromodel`

#206 ntorresd closed 1 week ago
1
Add an article about fitting models with seroreversion

#205 ntorresd opened 2 months ago
0
Improve Documentation: Use `get_foi_index()` Instead of Manual `rep(...)` for `foi_index` in `fit_seromodel` Examples

#204 JDConejeros opened 2 months ago
1
Divergent Transitions in fit_seromodel

#203 JDConejeros closed 2 months ago
1
Add options to `plot_seromodel`

#202 zmcucunuba opened 2 months ago
2
Set default behaviour for sampling initialization

#201 ntorresd opened 3 months ago
0
Full refactorization of modelling and visualisation functions

#200 ntorresd closed 2 months ago
9
Simulation functions and vignette plus other things

#199 ben18785 closed 3 months ago
6
Update `CITATION.cff`

#198 github-actions[bot] closed 3 months ago
0
Polish DESCRIPTION

#197 Bisaloo closed 4 months ago
0
Copy update-citation-cff fix from packagetemplate

#196 Bisaloo closed 4 months ago
0
Silent test failure on CI

#195 Bisaloo closed 4 days ago
1
Update test coverage workflow to allow use of global codecov token

#194 ntorresd closed 3 months ago
2
Priors functions

#193 zmcucunuba closed 2 months ago
5
zero foi truncated for some ages or years based on epi knowledge

#192 zmcucunuba closed 5 months ago
1
refactor prepare_serodata

#191 zmcucunuba closed 2 months ago
3
Restructuring inference methods

#190 ben18785 opened 5 months ago
2