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epiverse-trace
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serofoi
Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
https://epiverse-trace.github.io/serofoi/
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Creating functionality for time and age varying model.
#167
sumalibajaj
opened
6 months ago
1
Fix veev2012 duplicated data
#166
GeraldineGomez
closed
6 months ago
1
Fixes issue#112
#165
ekamau
closed
1 month ago
1
Corrects documentation syntax across the package
#164
ntorresd
closed
6 months ago
1
Documentation syntax needs to be corrected across the package
#163
ntorresd
closed
6 months ago
0
Refac visualisation module
#162
ntorresd
closed
6 months ago
1
`veev2012` contains duplicated data
#161
ntorresd
closed
6 months ago
0
Remove simulated data and replace (where used in e.g. testing) with code to simulate
#160
ben18785
closed
1 month ago
3
Fix ORCID links
#159
chartgerink
closed
7 months ago
2
Add age-varying and time-varying data simulation including seroreversion
#158
ntorresd
closed
6 months ago
7
Update stan files syntax and flexibilize `fit_seromodel` input structure
#157
ntorresd
closed
7 months ago
0
`fit_seromodel`'s input names should be consistent with `rstan::sampling`
#156
ntorresd
closed
7 months ago
0
Stan files syntax needs to be updated
#155
ntorresd
closed
7 months ago
0
Added validation function for `serodata` and `fit_seromodel`. Fixes #148
#154
jpavlich
closed
7 months ago
5
fix(bug): correct exposure_expanded matrix calculation avoiding loops
#153
ntorresd
closed
7 months ago
2
Input validation for `group_sim_data`
#152
jpavlich
closed
6 months ago
0
Input validation for `generate_sim_data`
#151
jpavlich
closed
1 month ago
0
Input validation for `prepare_bin_data`
#150
jpavlich
closed
7 months ago
2
Input validation for `prepare_bin_data`
#149
jpavlich
closed
7 months ago
0
Input validation for `fit_seromodel`
#148
jpavlich
closed
7 months ago
0
Input validation for `run_seromodel`
#147
jpavlich
closed
5 months ago
1
fix(bug): correct exposure_expanded matrix calculation avoiding loops
#146
ntorresd
closed
7 months ago
1
Bug in matrix calculation `get_prev_expanded`
#145
ntorresd
closed
7 months ago
0
143 fix prepare serodata
#144
ntorresd
closed
7 months ago
1
Input validation in `prepare_serodata` can be simplified
#143
ntorresd
closed
7 months ago
0
Fix prepare_serodata input validation and updates documentation
#142
ntorresd
closed
8 months ago
0
Replace `pracma::dot()` loop by matrix multiplication
#141
Bisaloo
closed
7 months ago
4
Fix data simulation functions sample size specification
#140
ntorresd
closed
7 months ago
1
Add flag to Makevars.win and minor Lintr corrections
#139
ntorresd
closed
9 months ago
0
doc: suggested installation method updated to pak
#138
ntorresd
closed
9 months ago
1
Apply Epiverse-TRACE standard for linting
#137
Bisaloo
closed
9 months ago
2
Should `plot_()` functions fail when receiving an invalid object?
#136
Bisaloo
closed
6 months ago
1
Simplify `get_prev_expanded()`
#135
Bisaloo
closed
9 months ago
1
Developer tools
#134
ntorresd
closed
9 months ago
6
Use development version of StanHeaders
#133
Bisaloo
closed
10 months ago
0
62 namespace
#132
jpavlich
closed
10 months ago
0
Github actions builds fails on MacOS and webassembly
#131
jpavlich
closed
9 months ago
2
Fix MIT license
#130
Bisaloo
closed
10 months ago
0
generalize data binning for `prepare_bin_data` and `plot_seroprev`
#129
davidsantiagoquevedo
closed
6 months ago
0
remove dependencies devtools and usethis
#128
ntorresd
closed
9 months ago
4
Merge dev into main
#127
Bisaloo
closed
11 months ago
0
Add data simulation functions
#126
Bisaloo
closed
10 months ago
3
Remove test_visualisation and related files
#125
Bisaloo
closed
11 months ago
0
Dev test models
#124
ntorresd
closed
11 months ago
0
fix: add input check for `age_mean_f` column
#123
ntorresd
closed
11 months ago
0
Logo update
#122
ntorresd
closed
11 months ago
1
prepare_serodata add_age_mean_f = FALSE
#121
davidsantiagoquevedo
closed
11 months ago
1
82 tidyverse dependency
#120
jpavlich
closed
1 year ago
0
82 tidyverse dependency
#119
jpavlich
closed
1 year ago
1
Pass argument from `fit_seromodel()` to `rstan::sampling()` via `...`
#118
Bisaloo
closed
1 week ago
3
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