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epiverse-trace
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serofoi
Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
https://epiverse-trace.github.io/serofoi/
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Pass argument from `fit_seromodel()` to `rstan::sampling()` via `...`
#118
Bisaloo
closed
1 week ago
3
refac: `fit_seromodel` returns stanfit object
#117
ntorresd
closed
11 months ago
2
115 remove dontrun from examples
#116
jpavlich
closed
1 year ago
0
Remove `\dontrun` from examples
#115
jpavlich
closed
1 year ago
0
Added `.data` import and prepended `.data$` to required variables
#114
jpavlich
closed
1 year ago
2
Add code and descriptions to the simulated datasets documentation
#113
ntorresd
closed
7 months ago
1
Change `counts` for `n_seropositive` across the package and `total` for `n_tested`
#112
ntorresd
closed
1 month ago
1
Change `counts` for `n_seropositive` across the package
#111
ntorresd
closed
1 year ago
1
Add checks on `simdata` and informative error messages to `get_sim_n_seropositive()`
#110
ntorresd
closed
1 month ago
1
Simplify fit_seromodel() output and related refactorizations
#109
ntorresd
closed
1 year ago
1
Simplify `fit_seromodel()` output and related refactorizations
#108
ntorresd
closed
1 year ago
0
Remove `serodata` from pre-loaded datasets of the package
#107
ntorresd
closed
1 year ago
1
Remove pre-load dataset `serodata` from the package
#106
ntorresd
closed
1 year ago
0
Issue 89: Simplify `fit_seromodel()` output
#105
ntorresd
closed
1 year ago
0
Refactor FoI central estimates computation into a separate function
#104
ntorresd
closed
1 year ago
0
No visible binding for global variable
#103
jamesmbaazam
closed
1 year ago
1
Use inherits() (or maybe is()) to check for attributes
#102
jamesmbaazam
closed
9 months ago
0
All declared Imports should be used
#101
jamesmbaazam
closed
9 months ago
0
Remove unnecessary data from simulated datasets
#100
ntorresd
closed
1 month ago
0
Adding info on chagas2012 serosurvey
#99
zmcucunuba
closed
11 months ago
0
Test for get_exposure_matrix function
#98
ntorresd
closed
11 months ago
0
function extract_seromodel_summary()
#97
yungwai-chan
opened
1 year ago
0
Model assumption for constant and changing FOI
#96
yungwai-chan
opened
1 year ago
0
fucntion fit_seromodel( ) and run_seromodel( )
#95
yungwai-chan
closed
5 months ago
1
Code base requires linting
#94
jamesmbaazam
closed
9 months ago
0
Add test suite
#93
jamesmbaazam
closed
11 months ago
2
Add input validation
#92
jamesmbaazam
closed
11 months ago
1
Add failsafe for `foi_model` argument in `fit_seromodel()` to avoid errors
#91
jamesmbaazam
closed
10 months ago
2
Consider creating an S3 class for objects created by serofoi
#90
Bisaloo
closed
7 months ago
2
Simplify `fit_seromodel()` output
#89
Bisaloo
closed
11 months ago
4
Replace custom test functions with equivalents from testthat
#88
jamesmbaazam
opened
1 year ago
0
Rename extdata to testdata in tests directory
#87
jamesmbaazam
opened
1 year ago
0
Delete docker folder
#86
jamesmbaazam
closed
9 months ago
2
Reorganise testing infrastructure
#85
jamesmbaazam
opened
1 year ago
0
Remove testepidemics.R in tests folder
#84
jamesmbaazam
opened
1 year ago
0
Add functions to simulate datasets to the seroprevalence_data module.…
#83
ntorresd
closed
11 months ago
3
Tidyverse dependency
#82
sbfnk
closed
11 months ago
1
Add contributors to DESCRIPTION file
#81
sbfnk
opened
1 year ago
0
Dev fix pr 1
#80
ntorresd
closed
1 year ago
1
main <- dev: add data simulation functions.
#79
ntorresd
closed
1 year ago
1
Dev integration
#78
ntorresd
closed
1 year ago
1
Fix very large git repository
#77
Bisaloo
closed
10 months ago
6
update: lifecycle stage in README files
#76
GeraldineGomez
closed
1 year ago
0
small tweaks to documentation titles so that we identify them well as …
#75
zmcucunuba
closed
1 year ago
1
Simulate from age-varying FOI serocatalytic model
#74
ekamau
closed
6 months ago
12
Allow users to perform optimisation (rather than sampling)
#73
ben18785
opened
1 year ago
0
Modify `get_exposure_matrix` to allow multiple serosurveys
#72
ben18785
opened
1 year ago
8
Binned age groups
#71
ben18785
opened
1 year ago
4
Simplify and generalise `get_exposure_ages`
#70
ben18785
closed
1 week ago
2
Combine Stan files
#69
ben18785
closed
1 month ago
11
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