erikrikarddaniel pfitmap issues

erikrikarddaniel / pfitmap

1 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Replace static hmm logos with skylign

#117 erikrikarddaniel opened 10 years ago
0
Too few sequences returned

#116 erikrikarddaniel opened 10 years ago
0
How to handle robots?

#115 erikrikarddaniel opened 10 years ago
0
Choosing without clicking

#114 erikrikarddaniel closed 10 years ago
2
What are the two extra domains in the ribbon diagram?

#113 erikrikarddaniel closed 10 years ago
1
Showing database sometimes highlights two

#112 erikrikarddaniel closed 10 years ago
2
Ribbon diagram failure

#111 erikrikarddaniel closed 10 years ago
1
Add accession numbers to count_matrix

#110 erikrikarddaniel closed 10 years ago
1
count_matrix: sort protein columns hierarchically

#109 erikrikarddaniel opened 10 years ago
0
How should we handle wgs not in RefSeq but elsewhere in NR?

#108 erikrikarddaniel closed 10 years ago
1
Why doesn't Pseudomonas syringae pv. morsprunorum str. M302280 have an enzyme?

#107 erikrikarddaniel closed 10 years ago
1
Log message for import of protein_counts is misleading

#106 erikrikarddaniel closed 10 years ago
1
Strain on all taxa

#105 erikrikarddaniel closed 10 years ago
1
Can deleting old protein_counts be made quicker?

#104 erikrikarddaniel closed 10 years ago
3
Do not slice taxa for the WGS case

#103 erikrikarddaniel closed 10 years ago
1
Deprecation message from pfitmap_release_spec.rb

#102 erikrikarddaniel closed 10 years ago
1
An organism may have several entries in a single database

#101 erikrikarddaniel closed 10 years ago
1
Taxon names sometimes disappear from the GUI

#100 erikrikarddaniel closed 10 years ago
1
NrdDh groups (or all protein groups) are not loaded for GenBank

#99 erikrikarddaniel closed 10 years ago
2
Uncultured organisms do not have superkingdom

#98 erikrikarddaniel closed 10 years ago
1
Showing a pfitmap_release takes ages...

#97 erikrikarddaniel opened 10 years ago
0
Add PFL

#96 erikrikarddaniel opened 10 years ago
0
Calculate fails on GenBank with timeout

#95 erikrikarddaniel closed 10 years ago
1
Indicate choices in protein counts view

#94 erikrikarddaniel closed 10 years ago
0
Change name of circos diagram to "Ribbon diagram"

#93 erikrikarddaniel closed 10 years ago
0
Toggle zeros with checked columns should filter rows with zero for these columns

#92 erikrikarddaniel closed 10 years ago
0
Select database to show

#91 binnisb closed 10 years ago
0
Over counting genoems with proteins

#90 binnisb closed 10 years ago
0
GenBank export

#89 erikrikarddaniel closed 10 years ago
1
.fasta export from statistics interface

#88 erikrikarddaniel closed 10 years ago
1
Add accession numbers to protein_count

#87 erikrikarddaniel closed 10 years ago
1
Import sequence from SLLBioSQL to DBSequence

#86 erikrikarddaniel opened 10 years ago
0
Add gis to BioSQL fetch queue if not present

#85 erikrikarddaniel closed 10 years ago
3
Create model SequenceDatabase

#84 binnisb closed 10 years ago
0
Odd patterns

#83 erikrikarddaniel closed 10 years ago
0
When there is space in taxon filterin, we loose the filtering

#82 binnisb closed 10 years ago
0
Change column names to proper, full names in statistics interface

#81 erikrikarddaniel closed 11 years ago
1
Change link from "Browse RNR statistics" on first page

#80 erikrikarddaniel closed 11 years ago
1
Reimplement calculate

#79 erikrikarddaniel closed 10 years ago
0
Remove reference from protein to hmm_profile

#78 erikrikarddaniel closed 10 years ago
0
Create released_db model and refer to it from protein_count, protein and taxon

#77 erikrikarddaniel closed 10 years ago
5
Add columns to load_database

#76 erikrikarddaniel closed 10 years ago
0
.fasta file imports take long.

#75 erikrikarddaniel opened 11 years ago
0
Add pfitmap_release and sequence_database to protein_count, protein and taxon

#74 erikrikarddaniel closed 11 years ago
1
Create load_database model

#73 erikrikarddaniel closed 11 years ago
2
Filter zeros

#72 erikrikarddaniel closed 10 years ago
0
Old releases loose their taxons when new one is calculated

#71 binnisb closed 11 years ago
1
BiosqlWeb call fails, debug and fix

#70 binnisb closed 11 years ago
1
Put boarders around selected cells / row / columns

#69 binnisb closed 10 years ago
0
Color by disappears when changing taxon level / changes filtering

#68 binnisb closed 10 years ago
0