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Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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Installation issue
#356
ryao-mdanderson
closed
1 year ago
2
the problem of long sequences
#355
lanzhou-dawn
closed
1 year ago
1
No module named 'openfold'
#354
sweetcodeer
closed
1 year ago
2
RUN esmfold on cpu
#353
Catiks
closed
1 year ago
6
metadata dataframe content, add sequence crc64
#350
tomsercu
opened
1 year ago
1
Obtaining a embedding for sequence
#348
SalvatoreRa
closed
1 year ago
2
How do I set the pretrained model download path?
#347
Catiks
closed
1 year ago
2
How to search sequences in bulk?
#341
1185307269
closed
1 year ago
6
fix: iterate over tokenized sequence / index-error
#338
hredestig
opened
1 year ago
0
No module named 'openfold'
#336
yesols
closed
1 year ago
2
Adding console scripts
#331
andersoncarlosfs
closed
1 year ago
7
Adding console scripts
#330
andersoncarlosfs
closed
1 year ago
0
Allow ESMFold run w/ pre-downloaded models
#329
YaoYinYing
closed
1 year ago
4
Is it possible to train the ESMFold model based on the openfold ?
#327
pengshuang
closed
1 year ago
1
No template block in ESM-Fold?
#326
zhenyuhe00
closed
1 year ago
4
Reorganize the README
#323
ebetica
closed
1 year ago
0
ESMAtlas README
#322
ebetica
closed
1 year ago
0
Release ESMFold - esm.pretrained.esmfold_v1
#321
tomsercu
closed
1 year ago
0
why use \ as the break line
#320
ShallowDream0218
closed
1 year ago
2
Incorrect sequence length calculation in usage example
#319
kklemon
closed
1 year ago
1
Allow inverse folding model to score sequences on GPU
#317
hnisonoff
closed
1 year ago
0
What is the best way to gather the representation of the protein?
#315
smiles724
closed
1 year ago
2
ESM2 Language Head can not correctly decode Embeddings
#313
Leo-T-Zang
closed
1 year ago
1
Wrong colab link for inverse folding multichain notebook
#312
chloechsu
closed
1 year ago
1
Using ESM2 for structure prediction
#311
YFeriel
closed
1 year ago
1
Update version.py to 1.0.3
#310
nikitos9000
closed
1 year ago
0
Have the folding trunk and structure modules been released?
#309
pengshuang
closed
1 year ago
1
Update extract.py
#304
eric-tc-wong
closed
1 year ago
3
How do I fix the issue of "TypeError: get_batch_converter() takes 1 positional argument but 2 were given"
#303
JiayuanDing100
closed
1 year ago
6
extract.py truncation_seq_length error
#302
eric-tc-wong
closed
1 year ago
2
How to deal with Amino Acids that are not in the vocabulary
#301
HannesStark
closed
1 year ago
1
"-" token in ESM1b alphabet
#300
adrienchaton
closed
2 years ago
2
use of bos and eos token when training
#299
zhenyuhe00
closed
2 years ago
4
fix `fairscale` inference example
#298
walid0925
closed
2 years ago
0
non-determinism when running inference with CPU offloading
#297
walid0925
closed
2 years ago
1
ESM License
#296
hydrophobicreduction
closed
2 years ago
1
Fix FSDP example
#291
nikitos9000
closed
2 years ago
0
Sharing models through Hugging Face
#284
osanseviero
closed
1 year ago
5
inference in half precision
#283
adrienchaton
closed
2 years ago
4
Fix: move sequence truncation into BatchConverter
#278
Alexperiments
closed
2 years ago
1
Fix the bash commands in the README file
#275
Alexperiments
closed
2 years ago
0
Main README's 'click to copy' returns broken commands
#274
Alexperiments
closed
2 years ago
0
Predicted ESM2 logits depend on other elements within a batch
#273
FedericoV
closed
1 year ago
11
how much pre-training data is needed to get a decent Long_P@L score for unsupervised contact prediction?
#270
zhenyuhe00
closed
2 years ago
1
ESM folding block
#269
gdharuman11
closed
2 years ago
2
Are there any dropout in FoldingBlock?
#268
zhenyuhe00
closed
1 year ago
1
Token dropout is set to Ture duing inference?
#267
zhenyuhe00
closed
2 years ago
5
How to use the embedding of ESM-2 when training ESM-Fold
#266
zhenyuhe00
closed
1 year ago
3
which layer's attention maps are used as template information?
#265
zhenyuhe00
closed
2 years ago
1
which layer's attention maps used as template information in ESM-Fold
#264
zhenyuhe00
closed
1 year ago
4
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