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Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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details of outerdifference
#263
zhenyuhe00
closed
2 years ago
2
Layer weights for ESM-Fold
#262
zhenyuhe00
closed
1 year ago
6
training ESM-2 using bf16 or fp16 or tf32 or fp32?
#259
zhenyuhe00
closed
2 years ago
2
unable to import esm
#257
pengzhangzhi
closed
2 years ago
8
Restrict fairscale usage only to FSDP-specific inference example
#256
nikitos9000
closed
2 years ago
0
ESM2 embedding extraction error: 'NoneType' object has no attribute 'arch'
#255
HannesStark
closed
2 years ago
3
ESM-2 Public Release Updates
#254
nikitos9000
closed
2 years ago
0
ModuleNotFoundError - "model" directory is missed in setup.py
#253
ptynecki
closed
2 years ago
7
ESM-2 Public Release
#252
nikitos9000
closed
2 years ago
0
The shape of contact map is not consistent with residue length
#251
zhenyuhe00
closed
2 years ago
3
Where to download the CAMEO hard targets
#250
zhenyuhe00
closed
2 years ago
1
training code for unsupervised contact prediction
#249
zhenyuhe00
closed
2 years ago
4
Changed the way we get the parameters' device for fsdp
#248
zzk1st
closed
2 years ago
1
Minor Fixes
#245
tomsercu
closed
2 years ago
0
MSA dataset
#244
EBGU
closed
2 years ago
2
Add links to CATH v4.3 data in inverse folding README
#243
chloechsu
closed
2 years ago
0
missing EOS token in encoded sequences for T6 and T12
#241
adrienchaton
closed
2 years ago
1
Question about aa position counts
#240
Didymos056
closed
2 years ago
3
Inverse Folding Feature Request: Fixing parts of the protein sequence
#236
chanjed
closed
2 years ago
5
When using ESM-MSA-1b, is the MSA generated in real-time from the input sequence or is it fixed?
#235
walt676
closed
2 years ago
1
MSA batch converter does not accept pre-masked MSAs
#234
seanrjohnson
opened
2 years ago
5
Code for supervised contact prediction
#232
zhenyuhe00
closed
2 years ago
1
Remove insertions from MSA in examples/variant-prediction #230
#231
Jacoberts
closed
2 years ago
3
read_msa in examples/variant-prediction does not remove insertions
#230
Jacoberts
closed
2 years ago
2
Unsupervised fine-tuning ESM-1v script
#229
NingNing-C
closed
2 years ago
1
Inconsistent result between multi-MSAs and single-MSAs
#228
huangtinglin
opened
2 years ago
2
native log likelihood changes at each execution
#226
avilella
closed
2 years ago
3
Embeddings for protein structures
#225
sky-2002
closed
2 years ago
1
Add multichain functionalities for inverse folding
#224
chloechsu
closed
2 years ago
0
pip3 install missing inverse_folding
#221
Oran-G
closed
2 years ago
3
cannot import name 'esm_if1_gvp4_t16_142M_UR50'
#220
ElArkk
closed
2 years ago
2
Replace inaccurate wording of greedy sampling with multinomial sampling
#218
chloechsu
closed
2 years ago
1
AttributeError: module 'esm' has no attribute 'Alphabet'
#216
BenjyNStrauss
closed
2 years ago
2
ignore esm/dev
#215
tomsercu
closed
2 years ago
0
Model consumes too much computing resources.
#214
walt676
closed
2 years ago
6
Error in loading ESM1b model
#213
martinez-zacharya
closed
2 years ago
2
Request of raw prediction scores for zero-shot variant prediction
#210
Stephen2526
closed
2 years ago
1
GVP Decoder of GVP-GNN
#209
EricZhangSCUT
closed
1 year ago
3
Avoid torch-geometric dependency by skipping esm.inverse_folding by default
#207
tomsercu
closed
2 years ago
0
Bug fix for issue #202
#206
chloechsu
closed
2 years ago
1
Bug fix for issue #197
#205
chloechsu
closed
2 years ago
1
train data problem
#204
Wangchentong
closed
2 years ago
1
Using the same input for the inverse_folding model will produce different outputs
#202
lupengk
closed
2 years ago
2
like-for-like prediction of binding affinity for pairs of chains with different length
#201
avilella
closed
2 years ago
1
Structure dataset availability
#200
oliverdutton
closed
2 years ago
2
Bias of chosing amino acid for inverse folding
#199
vuhongai
closed
2 years ago
1
About huggingface support for esm
#198
chang-github-00
closed
1 year ago
6
Inverse folding model crashes with 3BTA
#197
konstin
closed
2 years ago
1
calculate the log likelihood of 2 chains vs a 3rd?
#195
avilella
closed
2 years ago
1
What is different between the different models produced by the inverse folding script?
#192
avilella
closed
2 years ago
0
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