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Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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update contact prediction example notebook
#191
rmrao
closed
2 years ago
1
Update ESM-IF1 colab notebook title
#190
chloechsu
closed
2 years ago
0
Fix ESM-IF1 colab link
#189
chloechsu
closed
2 years ago
0
Predicting over multiple chains/restricting design on part of the chain
#188
gezmi
closed
2 years ago
2
Updated ESM-IF1 colab notebook
#187
chloechsu
closed
2 years ago
0
Repo reshuffle
#186
tomsercu
closed
2 years ago
2
ESM-IF1
#185
chloechsu
closed
2 years ago
0
Inverse folding pull request
#184
chloechsu
closed
2 years ago
1
add ESM-1v bibtex file for easy citation
#181
rmrao
closed
2 years ago
0
model.eval() in README quickstart example
#180
tomsercu
closed
2 years ago
0
Make sure extract.py refuses MSA inputs, closes #148
#179
tomsercu
closed
2 years ago
1
Inconsistent MSA representation
#178
valentas1
closed
2 years ago
3
can I use the code to train the model from scratch?
#177
onlyonewater
closed
2 years ago
1
Error in batch_converter from PyPI release
#176
nickbhat
closed
2 years ago
2
download the model weights to local
#174
lzhangUT
closed
2 years ago
7
Average length of pretraining protein sequences
#173
Yijia-Xiao
closed
2 years ago
2
Improve error for esm-1v contact prediction regression weights. Remove warning, but raise when `return_contacts=True`
#170
ftlbiped
opened
2 years ago
1
Missing model.eval() in main README
#169
samgelman
closed
2 years ago
2
Error at downloading esm_msa1b_t12_100M_UR50S model
#168
etiur
closed
2 years ago
2
dataset of contact prediction
#167
JianquanZhao
closed
2 years ago
1
ValueError: Sequence length 1042 above maximum sequence length of 1024.
#166
liudan111
closed
2 years ago
2
Error out or Memory
#165
mahdi-b
closed
2 years ago
0
KeyError: 'J'
#164
liudan111
closed
2 years ago
6
Possible mistake in batch_converter
#161
Haasha
closed
2 years ago
3
ESMForMaskedLM not in transformers
#158
fteufel
closed
2 years ago
5
Is the truncation code in extract.py reasonable?
#157
diamondgloves
closed
2 years ago
4
the 41 deep mutational scanning datasets
#153
lzhangUT
closed
2 years ago
9
Huggingface Transformers model compatibility?
#152
ddofer
closed
1 year ago
2
variant-prediction + MSA transformer: incorrect mutation indices?
#149
adamlerer
closed
2 years ago
3
OSError: [Errno 36] File name too long
#148
agarrubio
closed
2 years ago
1
Fix data leakage in CV in variant prediction example
#147
kiramt
closed
2 years ago
1
Randomly Initialized ESM's
#143
nickbhat
opened
2 years ago
5
Update torch-hub load to point to main branch
#138
liujas000
closed
2 years ago
0
retrain esm
#137
poppy-yebo
closed
2 years ago
3
About downstream tasks
#136
Yijia-Xiao
closed
2 years ago
4
README Example fails with IndexError
#135
kiramt
closed
2 years ago
2
urllib.error.HTTPError: HTTP Error 404: Not Found when trying to load pretrained model
#134
VaticanCameos99
closed
2 years ago
3
A minor detail about positional embedding
#132
Yijia-Xiao
closed
2 years ago
0
About trRosetta data used in training regression head
#131
YijiaXiao
closed
3 years ago
7
About pretraining data amount
#130
YijiaXiao
closed
3 years ago
2
ESM-MSA-1v Per task performance
#122
Licko0909
closed
2 years ago
1
Knowledge transfering/distillation using pseudo label
#121
Xinxinatg
closed
3 years ago
4
Fix: Use mutation-col option in variant-prediction/predict.py
#112
luoyunan
closed
3 years ago
2
Difference between different ESM1v models?
#111
xinformatics
closed
3 years ago
6
Error when loading esm transformer
#109
yangkky
closed
3 years ago
11
HTTP Error 403: Forbidden: "esm1v_t33_650M_UR90S_1-contact-regression.pt"
#108
Licko0909
closed
3 years ago
3
CUDA runtime error
#107
hury07
closed
3 years ago
2
fix a bug of undefined Alphabet.toks
#106
cutecutecat
closed
3 years ago
5
What model is needed for regression_data in esm.pretrained.load_model_and_alphabet_local?
#103
xmhh
closed
3 years ago
8
Bugfix: load local models (#101)
#102
tomsercu
closed
3 years ago
0
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