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Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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load_model_and_alphabet_local model_name not defined
#101
eric-tc-wong
closed
3 years ago
2
"unsupervised" contact prediction
#96
intersun
closed
3 years ago
1
Unable to load many sequences
#95
phiweger
closed
3 years ago
4
Documentation needed: contact prediction distance threshold
#94
javierbq
closed
3 years ago
2
[Question] Supervised contact map and secondary structure models
#90
flajolet
closed
3 years ago
1
Meanings of tokens in alphabet
#84
quailwwk
closed
3 years ago
1
Optional arg for truncation to extract.py
#83
sbonner0
closed
3 years ago
1
[Question] AssertionError using extract.py
#77
JinyuanSun
closed
3 years ago
1
Two question about ESM_MSA
#73
zedzad
closed
3 years ago
0
ModuleNotFoundError: fused_layer_norm_cuda
#62
SimonKitSangChu
closed
3 years ago
1
"invalid dimensions for input" When Running with ONNXRuntime
#61
ashrafgt
closed
3 years ago
3
MSA Column attention's softmax axis is not the same as the padding_mask
#57
andrewcchang
closed
3 years ago
3
Embedding proteins in batches with MSA transformer?
#56
Haxxardoux
closed
3 years ago
1
How I can extract attention map?
#55
nasserhashemi
closed
3 years ago
1
MSA transformer
#54
mhj112358
closed
3 years ago
1
Embedding not reproducible? [token_representation] giving different results each time
#53
gaceladri
closed
3 years ago
5
Proteins longer than 1024 causes an exception on the CPU and poisons the GPU
#49
konstin
closed
3 years ago
2
hello ,guys ,is there a method to reproduce the pretrain procedure ?
#48
paulrich1234
closed
3 years ago
1
How to reproduce MSA Transformer?
#47
HelloCodingWorld163
closed
3 years ago
1
ESM-MSA-1 unsupervised contact prediction Bug
#46
jas-preet
closed
3 years ago
3
Upload 0.3.0 on pypi?
#45
hadim
closed
3 years ago
7
Supervised contact prediction network
#44
mhj112358
closed
3 years ago
1
MSA file
#43
ryan-224
closed
3 years ago
1
ESM-MSA-1 from pytorch hub
#40
ryan-224
closed
3 years ago
1
Msa Transformer initial release
#37
tomsercu
closed
3 years ago
0
Inconsistent dimension when generate contact maps and maximum sequence length
#34
Douglas2Code
closed
3 years ago
7
Provide pre-training code?
#30
Jacoberts
closed
3 years ago
14
should stop token be in sequence representation?
#29
mboedigh
closed
3 years ago
4
Odd Prec?
#28
227BaronChen
closed
3 years ago
6
Error in Loading State Dict
#27
brucejwittmann
closed
3 years ago
5
Contact-map
#26
nasserhashemi
closed
3 years ago
2
Decoding SSP labels
#25
chanjed
closed
3 years ago
1
Decoding an embedding back to a sequence
#24
martin-steinegger
closed
3 years ago
4
[Question] Similarity search using the embeddings of the training dataset (uniparc)
#23
gokceneraslan
closed
3 years ago
4
Fine-tune ESM model
#22
elbasir
closed
3 years ago
1
Any suggestions for extracting embeddings for sequences with > 1024 residues?
#21
ptkim1
closed
3 years ago
3
Running by CPU mode, GPU is occupied
#20
wangleiofficial
closed
3 years ago
3
OOM on Colab
#19
aiXander
closed
3 years ago
3
How come the networks include <cls>, <eos>, <unk> and other similar tokens?
#18
tueboesen
closed
3 years ago
4
Broken pip install
#17
SamusRam
closed
3 years ago
8
Pretrained model unable to predict correctly in the test example?
#16
tueboesen
closed
3 years ago
3
fine-tune model with language model head
#15
wjs20
closed
3 years ago
5
decode method for batch_converter
#14
wjs20
closed
3 years ago
1
Special Symbols In Proteins
#13
JinLi711
closed
3 years ago
5
Model fine tuning example
#12
wjs20
closed
3 years ago
2
Pre-training and fine-tuning scripts
#11
wuzhen247
closed
3 years ago
5
Allow using load_model_and_alphabet_local with the cpu
#10
konstin
closed
3 years ago
1
Fine Tuning using the ESM model
#9
wward97
closed
3 years ago
2
Quick start example with GPU
#8
AZaitzeff
closed
3 years ago
3
Version the lib
#7
hadim
closed
4 years ago
3
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