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fgcz
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prolfqua
Differential Expression Analysis tool box R lang package for omics data
https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00441
MIT License
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covr - Test Coverage for prolfqua
#34
cpanse
closed
1 year ago
2
Create CODE_OF_CONDUCT.md
#33
wolski
closed
2 years ago
0
remove Contrasts$get_linfct() from Contrast Interface
#32
wolski
closed
3 months ago
1
Simple Impute - if mean below 10% - diff to be estimated at 0
#29
jjGG
closed
2 years ago
2
missing presence show using venn diagram
#28
wolski
closed
7 months ago
3
Add function to summarize significant fold changes to ContrastPlotter
#27
wolski
opened
2 years ago
0
add heatmap with only sample wise clustering
#26
wolski
opened
2 years ago
0
integrate proDA
#25
wolski
opened
2 years ago
2
Error Handling: Contrast and model specification
#24
jjGG
opened
3 years ago
0
More descriptive axis labels for the MA plot
#23
fabianegli
closed
3 years ago
4
Export analysis results to ExpressionSet and ExpressionSetViewer
#22
wolski
opened
3 years ago
0
manage bioc submission
#21
cpanse
closed
2 years ago
1
LICENSE
#20
cpanse
closed
2 years ago
1
cosmetics on workflows
#19
cpanse
closed
3 years ago
0
added CI
#18
cpanse
closed
3 years ago
1
Ion Quant error: Index out of bounds for length 10001
#17
jjGG
closed
3 years ago
1
Protein Boxplot/ supervised heatmap
#16
wolski
closed
3 years ago
0
Example run scripts for MSFragger and MaxQuant.
#15
wolski
closed
4 years ago
1
mixedModelQuestion
#14
wolski
closed
3 years ago
0
Have a look at msnbase robustSummary
#13
wolski
closed
3 years ago
1
Improve handling of rank deficient models
#12
wolski
closed
3 years ago
1
Add FDR controlled sample size estimation
#11
wolski
opened
4 years ago
0
add two columns with both sides of the contrast
#10
wolski
closed
3 years ago
1
Improvements to MQSummary2.Rmd
#9
wolski
closed
4 years ago
0
improve sample size estimation
#8
wolski
closed
3 years ago
2
add ropeca type protein level p-value calculation
#7
wolski
closed
3 years ago
4
hkeysLevel
#6
wolski
closed
4 years ago
1
tidyMQ_PeptideProtein examples fix required
#5
wolski
closed
3 years ago
0
Use strategy pattern in contrasts_linfct
#4
wolski
closed
4 years ago
0
add moderated p.values
#3
wolski
closed
5 years ago
1
Define column with annotations to get through analysis
#2
wolski
closed
2 years ago
2
Add column with FDR BH
#1
wolski
closed
4 years ago
0
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