fiberseq fibertools-rs issues

fiberseq / fibertools-rs

Tools for fiberseq data written in rust.

https://fiberseq.github.io/fibertools/fibertools.html

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Adding an option for genome-based m6a coordinates for the extract flag --m6a

#66 mtcicero26 closed 1 week ago
6
False methylations called in first 7 or so bp

#65 mtcicero26 closed 1 week ago
4
Work on the next release

#64 mrvollger closed 1 week ago
0
ft footprint related

#63 ymao4926 closed 1 week ago
0
MissingInputException error when running fiberseq-smk

#62 AnnaE-F closed 2 months ago
1
MSP and NUC calling at the end of fibers

#61 RisaWatanabe closed 2 months ago
3
call fires in predict-m6a

#60 mrvollger closed 2 months ago
0
Add a QC command that calculates basic statistics on a ft bam

#59 mrvollger closed 3 months ago
0
how to state the genome 6mA marks

#58 cell-c closed 2 months ago
4
expression filter

#57 mrvollger closed 2 months ago
1
Expression filter

#56 mrvollger closed 3 months ago
0
Question regarding BAM header in pipeline output

#55 alexpreynolds closed 5 months ago
6
Questions about ft extract and ft fire commands

#54 MariosEft97 closed 3 months ago
2
ft extract and pysam return different molecular/reference coordinates for the same read

#53 MariosEft97 closed 6 months ago
2
add-nucleosomes --min-ml-score option set to small values results in no nuc, msp or fire calls

#52 MariosEft97 closed 6 months ago
2
Can't run predict-m6a on ONT data

#51 connorhorton closed 6 months ago
1
Working on v0.5.0

#50 mrvollger closed 3 months ago
0
"Illegal instruction" after updating to latest version of fibertools-rs

#49 ywang285 closed 4 months ago
6
ft center not working on K.marxianus data

#48 shedou35 closed 8 months ago
1
0.4.2

#47 mrvollger closed 8 months ago
0
feat: convert pytorch models to onnx to allow more backends

#46 mrvollger closed 8 months ago
0
rebase

#45 mrvollger closed 8 months ago
0
Add onnx models to prediction

#44 mrvollger closed 8 months ago
0
Footprinting

#43 mrvollger closed 8 months ago
0
Footprinting

#42 mrvollger closed 8 months ago
0
pyft: Missing FIRE precision scores for MSPs in pyft.Ranges() class

#41 aman62000 closed 8 months ago
2
What is the license?

#40 jjv5 closed 9 months ago
1
error[E0599]: no function or associated item named `from_xgoost_dump` found for struct `GBDT` in the current scope

#39 YueYvetteHao closed 10 months ago
1
Refactor

#38 mrvollger closed 10 months ago
0
FIRE on targeted seq data: fiber-locations-shuffled.bed.gz is created empty

#37 Strausyatina closed 11 months ago
1
Add footprinting subcommand

#36 mrvollger closed 8 months ago
0
Panic during center

#35 ngamarra closed 9 months ago
1
py-ft fiber.cpg and ft extract --cpg producing different number of blocks

#34 StephanieBohaczuk closed 11 months ago
8
Addition of writing to pyft

#33 bmallo closed 10 months ago
1
documentation for fire peaks

#32 waltno closed 1 year ago
2
Bug: Assertion error in supplemental or secondary reads

#31 mrvollger closed 8 months ago
3
failed to run custom build command for `libz-sys v1.1.12`

#30 ywang285 closed 1 year ago
2
Nanopore support

#29 oushujun closed 1 year ago
4
Update center.md

#28 mrvollger closed 1 year ago
0
Train Revio HiFi data using train-m6A-calling

#27 choudharis2 closed 1 year ago
2
Prep kit/Sequencer model/flow cell requirements for 6mA basecalling

#26 ywang285 closed 1 year ago
3
Unable to install py-ft, maturin failed

#25 MorganHamm closed 1 year ago
1
Does m6a prediction require fiber-seq preperation

#24 ASLeonard closed 1 year ago
3
Is single-strand data supported?

#23 sparktx-nathan-johnson closed 1 year ago
1
ft center m6A methylation on non A sites

#22 rlegendre closed 1 year ago
2
ft center formatting minor issue with -w

#21 ymao4926 closed 1 year ago
1
Adding expression filters to fibertools

#20 mrvollger opened 1 year ago
1
reorganize test data

#19 mrvollger closed 1 year ago
0
Development

#18 mrvollger closed 1 year ago
0
remove redundant record in center

#17 mrvollger closed 1 year ago
0