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fiberseq
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fibertools-rs
Tools for fiberseq data written in rust.
https://fiberseq.github.io/fibertools/fibertools.html
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MSP and NUC calling at the end of fibers
#61
RisaWatanabe
closed
2 days ago
3
call fires in predict-m6a
#60
mrvollger
closed
1 week ago
0
Add a QC command that calculates basic statistics on a ft bam
#59
mrvollger
closed
4 weeks ago
0
how to state the genome 6mA marks
#58
cell-c
closed
4 days ago
4
expression filter
#57
mrvollger
closed
1 week ago
1
Expression filter
#56
mrvollger
closed
1 month ago
0
Question regarding BAM header in pipeline output
#55
alexpreynolds
closed
2 months ago
6
Questions about ft extract and ft fire commands
#54
MariosEft97
closed
1 month ago
2
ft extract and pysam return different molecular/reference coordinates for the same read
#53
MariosEft97
closed
3 months ago
2
add-nucleosomes --min-ml-score option set to small values results in no nuc, msp or fire calls
#52
MariosEft97
closed
3 months ago
2
Can't run predict-m6a on ONT data
#51
connorhorton
closed
3 months ago
1
Working on v0.5.0
#50
mrvollger
closed
1 month ago
0
"Illegal instruction" after updating to latest version of fibertools-rs
#49
ywang285
closed
2 months ago
6
ft center not working on K.marxianus data
#48
shedou35
closed
5 months ago
1
0.4.2
#47
mrvollger
closed
6 months ago
0
feat: convert pytorch models to onnx to allow more backends
#46
mrvollger
closed
6 months ago
0
rebase
#45
mrvollger
closed
6 months ago
0
Add onnx models to prediction
#44
mrvollger
closed
6 months ago
0
Footprinting
#43
mrvollger
closed
6 months ago
0
Footprinting
#42
mrvollger
closed
6 months ago
0
pyft: Missing FIRE precision scores for MSPs in pyft.Ranges() class
#41
aman62000
closed
6 months ago
2
What is the license?
#40
jjv5
closed
7 months ago
1
error[E0599]: no function or associated item named `from_xgoost_dump` found for struct `GBDT` in the current scope
#39
YueYvetteHao
closed
7 months ago
1
Refactor
#38
mrvollger
closed
8 months ago
0
FIRE on targeted seq data: fiber-locations-shuffled.bed.gz is created empty
#37
Strausyatina
closed
8 months ago
1
Add footprinting subcommand
#36
mrvollger
closed
6 months ago
0
Panic during center
#35
ngamarra
closed
7 months ago
1
py-ft fiber.cpg and ft extract --cpg producing different number of blocks
#34
StephanieBohaczuk
closed
9 months ago
8
Addition of writing to pyft
#33
bmallo
closed
8 months ago
1
documentation for fire peaks
#32
waltno
closed
10 months ago
2
Bug: Assertion error in supplemental or secondary reads
#31
mrvollger
closed
6 months ago
3
failed to run custom build command for `libz-sys v1.1.12`
#30
ywang285
closed
10 months ago
2
Nanopore support
#29
oushujun
closed
10 months ago
4
Update center.md
#28
mrvollger
closed
11 months ago
0
Train Revio HiFi data using train-m6A-calling
#27
choudharis2
closed
11 months ago
2
Prep kit/Sequencer model/flow cell requirements for 6mA basecalling
#26
ywang285
closed
11 months ago
3
Unable to install py-ft, maturin failed
#25
MorganHamm
closed
11 months ago
1
Does m6a prediction require fiber-seq preperation
#24
ASLeonard
closed
11 months ago
3
Is single-strand data supported?
#23
sparktx-nathan-johnson
closed
11 months ago
1
ft center m6A methylation on non A sites
#22
rlegendre
closed
1 year ago
2
ft center formatting minor issue with -w
#21
ymao4926
closed
12 months ago
1
Adding expression filters to fibertools
#20
mrvollger
opened
1 year ago
1
reorganize test data
#19
mrvollger
closed
1 year ago
0
Development
#18
mrvollger
closed
1 year ago
0
remove redundant record in center
#17
mrvollger
closed
1 year ago
0
0.2.4
#16
mrvollger
closed
1 year ago
0
Standing MRV Development PR
#15
mrvollger
closed
1 year ago
0
Bug in coordinates from ft center
#14
rlegendre
closed
1 year ago
7
Update Cargo.toml
#13
Dylan-DPC
closed
1 year ago
0
Uncomment compile line
#12
lvclark
closed
1 year ago
3
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