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gbouras13
/
pharokka
fast phage annotation program
MIT License
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container to docs
#360
gbouras13
closed
6 days ago
1
problem with messing up VERSION and ACCESSION
#359
lingyi-owl
opened
1 month ago
1
Can't use the downloaded db
#358
AnneliektH
closed
1 month ago
1
fails at pyhmmer
#357
dcampbdc
opened
1 month ago
0
mmseqs minor version
#356
Mewgia
opened
1 month ago
4
has solved
#355
ChaoXianSen
closed
2 months ago
0
Inquiry on error for running protein annotation
#354
songmj86
closed
2 months ago
2
While using --genbank Pharokka still counts from 0 instead of 1
#353
konstytucja
opened
2 months ago
0
Fix #339
#352
gbouras13
closed
2 months ago
0
add fixed card metadata [skip ci]
#351
gbouras13
closed
2 months ago
0
Error with Phanotate (return code 1)
#350
Norina28
closed
2 months ago
5
Google Colab error
#349
CristianUNR
closed
2 months ago
3
Issues with pharokka_multiplotter.py: IndexError: index -1 is out of bounds for axis 0 with size 0
#348
aryehjc
opened
3 months ago
1
fixes #346 manual db link [skip ci]
#347
gbouras13
closed
4 months ago
0
Database issues
#346
ZoseJapata
closed
4 months ago
10
v1.7.2
#345
gbouras13
closed
4 months ago
0
v1.7.2
#344
gbouras13
closed
4 months ago
0
UnsatisfiableError when installing with conda
#343
fluhus
closed
4 months ago
4
Inquiry on Pharokka
#342
songmj86
closed
4 months ago
3
Libgsl error from mash - cant run
#341
raw937
closed
5 months ago
1
update readme and notebooks
#340
gbouras13
closed
5 months ago
0
issues parsing genbank files produced by Pharokka
#339
vmkhot
closed
2 months ago
4
Linear genome plot?
#338
raw937
opened
5 months ago
3
getting consistent error with pharokka_multiplotter
#337
JEMINA-JOHN
closed
2 months ago
1
v1.7.1
#336
gbouras13
closed
6 months ago
1
Error with some sequences
#335
Sudaraka88
closed
6 months ago
2
Number-like sequence ID would generate invalid genbank files.
#334
shenwei356
closed
6 months ago
1
v1.7.0
#333
gbouras13
closed
7 months ago
1
ValueError: invalid literal for int() with base 10: 'Traceback (most recent call last):\n File "/home/resistance/miniconda3/envs/pharokkaENV/bin/phanotate
#332
yzhong005
closed
2 months ago
6
Alphabet error while annotating phage
#331
Fabian-Bastiaanssen
opened
7 months ago
1
Replace `hmmscan` with `hmmsearch`
#330
valentynbez
opened
7 months ago
0
fix: wrong attribute for `hmmer.plan7.Hit`
#329
valentynbez
closed
7 months ago
0
Wrong attribute - PyHMMER module
#328
valentynbez
closed
7 months ago
2
KeyError: 'Name contig'
#327
SergeyBaikal
opened
8 months ago
4
question about pharokka_plotter.py and multi-contig .fasta
#326
nsvarona
closed
7 months ago
3
Pharokka stuck at running mmseqs search
#325
quocviet0908
opened
8 months ago
7
v1.6.1
#324
gbouras13
closed
8 months ago
1
tRNAs are not being included in tbl file.
#323
hmontenegro
closed
8 months ago
1
Update biopython <1.82 [skip ci]
#322
gbouras13
closed
8 months ago
0
v1.6.0
#321
gbouras13
closed
8 months ago
1
pharokka failure due to missing BioPython function
#320
leahfa
closed
8 months ago
6
wrong Aragorn version
#319
ZaeemBIo
closed
8 months ago
0
ERROR | __main__:main:115 - The database directory was unsuccessfully checked. Please run install_databases.py.
#318
ZaeemBIo
closed
9 months ago
0
Prodigal-gv and Prodigal issue
#317
raw937
closed
8 months ago
1
dropped contigs
#316
k6logc
closed
8 months ago
5
Mash issue in upgrade
#315
raw937
closed
9 months ago
3
Prodigal not working Pharokka v1.4.1
#314
raw-lab
closed
8 months ago
2
Missing lot of databases
#313
ala98412
opened
9 months ago
8
Fixes #311 db path [skip ci]
#312
gbouras13
closed
9 months ago
0
database links incorrect
#311
marade
closed
9 months ago
2
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