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ge11232002
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TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
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How to write a `pfmlist` object to `jaspar.txt` or `cbust` format?
#40
jiangpuxuan
opened
4 months ago
0
getMatrixSet is incompatable with JASPAR2024
#39
mossconfuse
opened
7 months ago
1
Unable to find an inherited method for function ‘bg’ for signature ‘"PFMatrix"’
#38
alkurowska
opened
7 months ago
0
TFBSTools breaks colSums and rowSums: Error in .local(x, na.rm, dims, ...) : object 'CRsparse_colSums' not found
#37
Gesmira
closed
11 months ago
12
Compare TFBAs between two sequences
#36
jtlovell
opened
2 years ago
0
low number of TFs
#35
rojinsafavi
opened
2 years ago
1
how to import a custom motif matrix
#34
HZAU-dl
opened
2 years ago
1
all_versions = FALSE in JASPAR omits results
#33
nellykan
opened
2 years ago
3
JASPAR 2022
#32
akhst7
closed
2 years ago
3
Add JASPAR2022
#31
da-bar
closed
3 years ago
3
get alignment/gap position from PFMSimilarity
#30
fgeier
closed
2 years ago
1
TFBS
#29
rehan1988
closed
3 years ago
1
getMatrixSet
#28
chrismahony
closed
3 years ago
1
Problem installing TFBSTools
#27
eudoraleer
closed
3 years ago
2
Error in .validate_Vector_vertical_slots(x)
#26
Zepeng-Mu
closed
3 years ago
2
FPM --> PFM
#25
KaiAragaki
closed
4 years ago
1
Can TFBStools parse or convert the Minimal MEME Motif Format
#24
shangguandong1996
closed
3 years ago
0
Can I add a PFMatrix into PFMatrixlist
#23
shangguandong1996
closed
3 years ago
1
Add "UNVALIDATED" collection
#22
da-bar
closed
5 years ago
0
Add JASPAR2020
#21
da-bar
closed
5 years ago
0
hey ! gays ，how to filter the searchSeq result? How many experience score should be set
#20
BioLaoXu
closed
3 years ago
0
PFM question
#19
erin-a-clark
closed
5 years ago
4
runMEME,DNAStringSet fails when the seqs are un-named
#18
malcook
closed
6 years ago
1
Interpreting the score for a sequence scan with searchSeq
#17
SalvatoreRa
closed
6 years ago
2
ParseMEMEOutput Cannot Read My MEME Output File
#16
VikramMisra
closed
3 years ago
1
Interpretation of the score
#15
akhst7
closed
6 years ago
6
Add a showAsCell-method
#14
MalteThodberg
closed
6 years ago
1
Error upon loading package: No methods found in "RSQLite" for requests: dbGetQuery
#13
MalteThodberg
closed
7 years ago
1
unsafe.update() in searchSeq()
#12
tsoare
closed
6 years ago
3
2017 JASPAR DB
#11
akhst7
closed
6 years ago
5
parallelize searchSeq for PWMatrixList
#10
ge11232002
closed
7 years ago
1
toPWM() error
#9
NicolaLady
closed
8 years ago
4
searchAln on MSA
#8
ge11232002
closed
3 years ago
0
wrapper issue: integer arguments converted to character
#7
balwierz
closed
8 years ago
1
error capture for wrapper function
#6
ge11232002
closed
8 years ago
1
loading TFBSTools
#5
xszomol
closed
8 years ago
1
runMEME fails
#4
ge11232002
closed
8 years ago
3
getMatrixByID, getMatrixByNAME for multi-IDs/names
#3
dpolychr
closed
8 years ago
1
make searchSeq work on BSgenomeViews
#2
ge11232002
closed
3 years ago
0
Nathan: possible memory leak in TFMPvalue
#1
ge11232002
closed
8 years ago
0