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genepi
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nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
https://genepi.github.io/nf-gwas
MIT License
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Handling - Large scale Individual WGS VCF's
#107
snehaleela
opened
2 months ago
0
QQ Plot Error
#106
aaleksandrov95
opened
3 months ago
1
Add `docker-build` action to take advantage of caching and use sharding
#105
lukfor
closed
3 months ago
0
WGS data
#104
jjfarrell
opened
5 months ago
4
Gene-level analysis take long time
#103
filosi
opened
6 months ago
1
Update github-action to use latest nf-test and Nextflow versions
#102
lukfor
closed
6 months ago
0
annotation step seems to take a long time
#101
linminhtoo
closed
3 months ago
2
some Nextflow help to change "genotypes_prediction" param to 3 separate paths
#100
linminhtoo
closed
7 months ago
0
question regarding paper: running on SLURM/AWS Batch
#99
linminhtoo
opened
7 months ago
2
how do I create my own (possibly artificial) .bed/.bam/.fam files?
#98
linminhtoo
closed
7 months ago
2
Switch to Nextflow.error method
#97
seppinho
closed
7 months ago
0
test run seems to be hanging on Ubuntu with docker
#96
linminhtoo
closed
7 months ago
4
Testting/add snapshots
#95
AmstlerStephan
closed
7 months ago
1
Updated documentation
#94
salvidm
closed
7 months ago
1
Update regenie version to 3.4
#93
filosi
closed
8 months ago
0
Integration of VCF and BGEN for gene-based testing
#92
filosi
closed
8 months ago
0
Update nf-test to v0.8.2
#91
AmstlerStephan
closed
8 months ago
0
'Nextflow.exit(int,String)' doesn't support array
#90
lindenb
closed
7 months ago
2
Feature/regenie optional params
#89
seppinho
closed
11 months ago
0
Update to latest regenie version
#88
seppinho
closed
11 months ago
0
Add nf-validations
#87
seppinho
closed
11 months ago
0
Create subworkflows
#86
seppinho
closed
11 months ago
0
Features/update nf test
#85
seppinho
closed
1 year ago
0
Optimize config and delete unused modules
#84
seppinho
closed
1 year ago
0
Parallelize gwas-report-index
#83
seppinho
closed
1 year ago
0
Improve parallelization
#82
lukfor
closed
1 year ago
0
Simplify filter and merge logic
#81
seppinho
closed
1 year ago
0
Annotate genes using genomic-utils
#80
lukfor
closed
1 year ago
0
Fix sorting
#79
seppinho
closed
1 year ago
0
Problem in creating report when "TEST_FAIL"
#78
filosi
closed
11 months ago
3
Improve merge logic
#77
seppinho
closed
1 year ago
0
Remove unused tabix-merge.jar file
#76
ejseqera
closed
1 year ago
1
Request to move the tabix-merge.jar file into docker containers
#75
robsyme
closed
1 year ago
1
Set default value for annotation_min_log10p to 7.3
#74
johsr
closed
1 year ago
0
Feature/merge results
#73
filosi
closed
1 year ago
1
Issue with Gene level analysis on MERGE_RESULTS
#72
filosi
closed
1 year ago
2
solution for gene-level chromosome separated files input
#71
filosi
closed
8 months ago
1
Gene-level analysis
#70
filosi
closed
8 months ago
1
problem with rsID file download
#69
samuelecancellieri
closed
1 year ago
3
Add basic nextflow_schema.json
#68
robsyme
closed
1 year ago
5
Add rinted histogram if phenotypes_apply_rint is true (Features/histogram rinted)
#67
johsr
closed
1 year ago
0
Add option to chunk step2 files
#66
seppinho
closed
1 year ago
0
Merge features/improve-report branch into features/lift-over branch
#65
seppinho
closed
1 year ago
0
Features/lift over
#64
seppinho
closed
1 year ago
0
Feature/interaction testing
#63
seppinho
closed
1 year ago
0
Improve report and add index file to improve navigation
#62
lukfor
closed
1 year ago
0
Update top loci table
#61
lukfor
closed
1 year ago
2
Add interactive manhattan plot to report
#60
lukfor
closed
1 year ago
1
Add rsids to top hits
#59
lukfor
closed
1 year ago
1
Add interaction testing and conditional analysis to the pipeline
#58
johsr
closed
1 year ago
2
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