gitter-lab SINGE issues

gitter-lab / SINGE

Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

MIT License

11 stars 6 forks source link

issues

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Fix Docker image

#76 agitter closed 3 months ago
0
Switch to setup-matlab action for macOS tests

#75 agitter opened 6 months ago
0
Fix Docker image build failures

#74 agitter closed 3 months ago
3
Glmnet Mex dependency on old version of libgfortran - Ubuntu

#73 taraeicher closed 6 months ago
8
Is it possible to have a more detailed intro for the inputs in 'mat' format ?

#72 christear closed 1 year ago
3
Targetix

#71 atuldeshpande opened 2 years ago
0
Rebasing targetix to match current master

#70 atuldeshpande closed 2 years ago
0
Matlab crash while glmnetMex.mexmaci64 was running

#69 ElenaMerinoTejero opened 2 years ago
15
Error when running with a single regulator index

#68 agitter opened 2 years ago
0
Fixed regix bug

#67 atuldeshpande closed 2 years ago
2
Reference GRN for ESC to endoderm differentiation

#66 mfranke-2 closed 3 years ago
5
Prepare version 0.5.0 release

#65 agitter closed 3 years ago
0
Migrate from Travis CI to GitHub Actions

#64 agitter closed 3 years ago
2
Support v7 data and file separators in outdir

#63 atuldeshpande closed 3 years ago
0
Exit if hyperparameters file does not exist

#62 agitter opened 3 years ago
0
Delete Temporary mat files at the end of run_SINGE_GLG_test.sh

#61 atuldeshpande opened 3 years ago
4
Update GitHub Actions workflow env and path commands

#60 agitter closed 3 years ago
2
Support input mat files from Octave

#59 agitter closed 3 years ago
1
Allowing file separators in outdir parameter

#58 agitter closed 3 years ago
0
Branching processes

#57 atuldeshpande closed 4 years ago
4
Test updated 64 bit glmnet

#56 agitter opened 4 years ago
0
libgfortran issue on macOS

#55 agitter closed 4 years ago
1
Test running compiled SINGE on macOS

#54 agitter closed 4 years ago
5
Prepare version 0.4.1 release

#53 agitter closed 4 years ago
0
Shared Storage Bug Fix

#52 atuldeshpande closed 4 years ago
0
Prepare version 0.4.0 release

#51 agitter closed 4 years ago
0
Update USAGE.md

#50 atuldeshpande closed 4 years ago
0
Automating SINGE for branching trajectories

#49 atuldeshpande closed 4 years ago
2
Codechanges

#48 atuldeshpande closed 4 years ago
1
Add usage recommendations

#47 agitter closed 4 years ago
1
Switch to standard YYYY-MM-DD dates

#46 agitter opened 4 years ago
0
Script to generate hyperparameter file from parameter ranges

#45 atuldeshpande closed 4 years ago
0
Simplify Docker usage

#44 agitter closed 4 years ago
2
Arg consistency

#43 atuldeshpande closed 5 years ago
3
Fix apt-get Docker build error

#42 agitter closed 5 years ago
1
Docker build error

#41 adyprat closed 5 years ago
2
Consistent argument ordering

#40 agitter closed 5 years ago
1
Finish renaming SCINGE to SINGE in files

#39 agitter closed 5 years ago
2
Additional documentation for standalone script

#38 agitter closed 5 years ago
0
SINGE shell script and separation of GLG_Instance and Aggregate functions

#37 atuldeshpande closed 5 years ago
7
Check compiled binary and MATLAB file versions

#36 agitter closed 5 years ago
4
Automatically match compiled binary to versions of the MATLAB files

#35 agitter closed 5 years ago
2
Trivial change to test compile and deploy

#34 agitter closed 5 years ago
1
Build docker images on Travis CI

#33 agitter closed 5 years ago
2
Glmnet mex errors for large datasets

#32 atuldeshpande opened 5 years ago
1
Prepare version 0.3.0 release

#31 agitter closed 5 years ago
0
Add user guidelines to the readme and manuscript

#30 agitter closed 4 years ago
1
Optimize (Second Round)

#29 atuldeshpande closed 5 years ago
2
Optimize

#28 atuldeshpande closed 5 years ago
5
Prepare version 0.2.0 release

#27 agitter closed 5 years ago
0