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deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
BSD 3-Clause "New" or "Revised" License
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issue with tensorflow
#76
corkdagga
closed
3 months ago
13
Optimizing runtime on HPC
#75
sadams2013
closed
7 months ago
2
About making ground truth.
#74
Crispy13
closed
8 months ago
2
KeyError
#73
jferbe1
closed
8 months ago
5
normal pass / fail rate?
#72
AlcaArctica
closed
10 months ago
2
OSError: error -3 while reading file
#71
daaaaande
closed
10 months ago
8
GPU installation using quick start guide fails
#70
ap1438
closed
11 months ago
5
GPU installation failure with pip
#69
jsoghigian
closed
1 year ago
3
Separate subreads for mixed samples?
#68
icemduru
closed
1 year ago
3
bam or fastq issue
#67
HITzhongyu
closed
1 year ago
2
Change the wrong number of strand in the homepage image of pipeline_figure.
#66
one-matrix
opened
1 year ago
2
the label without alignment
#65
one-matrix
closed
1 year ago
5
vRAM limit
#64
fergsc
closed
1 year ago
1
Cannot open/create ccs.bam file?
#63
scthree
closed
1 year ago
6
Public raw train dataset availability
#62
marcpaga
closed
1 year ago
2
QV for each ccs reads
#61
Wenfei-Xian
closed
1 year ago
2
install.sh for conda env
#60
wyim-pgl
opened
1 year ago
1
[Repeat] Running deepconsensus results in "free(): invalid pointer" error
#59
mjg0
closed
1 year ago
17
python 3.9
#58
hildebra
closed
1 year ago
2
lower quality and less reads in deepconsensus 1.0 output compared to ccs
#57
daaaaande
closed
1 year ago
2
Installation from source file problem
#56
ap1438
closed
1 year ago
2
Error detecting params.json using docker in debian (10) HPC
#55
ap1438
closed
1 year ago
2
Lower number of >Q30 average quality reads for v1.1 compared to v0.3
#54
mason-linscott
closed
1 year ago
10
Use of samtools and awk to filter incorrect alignments.
#53
ap1438
closed
1 year ago
2
HPC resource managment not working with deepconsensus
#52
MmasterT
closed
1 year ago
0
Update documentation to pip version 1.0.1
#51
pichuan
closed
1 year ago
0
Fix a pip install issue reported in https://github.com/google/deepconsensus/issues/48
#50
pichuan
closed
1 year ago
0
Missing majority of ZMWs after running lima to search for adapters
#49
rosspdu
closed
1 year ago
4
Running deepconsensus results in "free(): invalid pointer" error
#48
mjg0
closed
1 year ago
15
Error: ModuleNotFoundError: No module named 'pandas._libs.interval'
#47
gevro
closed
1 year ago
6
Merge r1.0 into main.
#46
danielecook
closed
1 year ago
1
no subreads available
#45
michaelabrouk
closed
2 years ago
2
deepconsensus on metagenomic data
#44
ay-amityadav
closed
2 years ago
2
actc and kinetic data orientation
#43
gevro
closed
2 years ago
2
Missing about 30% of ZMWs in output
#42
gevro
closed
2 years ago
2
Strand of Fastq output
#41
gevro
closed
2 years ago
2
download params.json but Connection refused.
#40
ymwang233
closed
2 years ago
3
Merging aligned fastq output with original ccs BAM
#39
gevro
closed
2 years ago
2
question about the permutation invariance in the MSA input to the DeepConsensus model
#38
rainwala
closed
2 years ago
1
Error: StopIteration
#37
gevro
closed
2 years ago
5
Error: ValueError: Shapes (2640, 280) and (560, 280) are incompatible
#36
gevro
closed
2 years ago
15
Error: model/params.json not found
#35
gevro
closed
2 years ago
1
Chunking with deepconsensus
#34
gevro
closed
2 years ago
7
R0.3.1
#33
danielecook
closed
2 years ago
1
Advice for dealing with barcode multiplexing
#32
peterdfields
closed
2 years ago
3
DeepConsensus 0.3 --min_quality has no default?
#31
MartinPippel
closed
2 years ago
2
Alignment loss function
#30
marcpaga
closed
2 years ago
2
Docker - tensorflow error
#29
AMMMachado
closed
2 years ago
2
CPU installation on HPC, no sudo, no docker/singularity
#28
abueg
closed
2 years ago
7
Training tutorial?
#27
jelber2
closed
2 years ago
11
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