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deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
BSD 3-Clause "New" or "Revised" License
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Update install_nvidia_docker.sh to version 1.4.
#26
MariaNattestad
closed
2 years ago
0
An tutorial for running deepconsensus
#25
shengxinzhuan
closed
2 years ago
6
can deepconsensus run on an arm machine?
#24
shengxinzhuan
closed
2 years ago
6
General performance question
#23
chenxf611
closed
2 years ago
3
DeepConsensus model is not accessed from China
#22
zhangrengang
closed
2 years ago
2
params.json and checkpoint sample files
#21
peterdfields
closed
2 years ago
1
BrokenPipeError: [Errno 32] Broken pipe
#20
AhmedArslan
closed
2 years ago
2
Error (ccs software) - No space left on device (tmp file).
#19
AMMMachado
closed
2 years ago
12
general performance question and --cpu flag is not working
#18
MartinPippel
closed
2 years ago
4
deepconsensus-0.2.0 uses a lot of system RAM, so maybe best to split jobs into pieces, example provided
#17
jelber2
closed
2 years ago
4
deepconsensus-0.2.0 complains that subreads_to_ccs.bam is not indexed
#16
jelber2
closed
2 years ago
2
Docker or Singularity
#15
AMMMachado
closed
2 years ago
5
How to improve run time?
#14
MartinPippel
closed
2 years ago
1
deepconsensus.scripts.run_deepconsensus errors
#13
zhoudreames
closed
2 years ago
2
Support FOFN original subread input, document CLI
#12
maximilianpress
closed
2 years ago
2
Nofound model for Quick start
#11
xuzaoxu
closed
2 years ago
2
run issue
#10
MartinPippel
closed
2 years ago
5
Quick start example code question
#9
flowers9
closed
3 years ago
4
error in 1_merge_datasets step
#8
guosongjia
closed
3 years ago
3
pbccs parameters
#7
alexcorm
closed
3 years ago
2
parallelizing consensus calling
#6
sjin09
closed
3 years ago
0
Workflow questions
#5
gevro
closed
3 years ago
3
Two alignments from the same subread to the CCS read
#4
sjin09
closed
3 years ago
3
pbmm2 using too much memory
#3
zhoudreames
closed
3 years ago
5
pip install deepconsensus==0.1.0 fails...
#2
sjin09
closed
3 years ago
2
install problem
#1
zhoudreames
closed
3 years ago
3
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