googlegenomics bigquery-examples issues

googlegenomics / bigquery-examples

Advanced BigQuery examples on genomic data.

Apache License 2.0

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issues

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Update bigrquery parameter name

#43 deflaux closed 7 years ago
0
Update instructions to clarify standard SQL versus legacy SQL

#42 tomasramanauskas opened 7 years ago
8
Add script for Simons Genome Diversity Project sample attributes.

#41 deflaux closed 7 years ago
0
Remove obsolete content.

#40 deflaux closed 7 years ago
0
Add sample queries for Tute annotation.

#39 deflaux closed 7 years ago
0
Port queries to standard SQL.

#38 deflaux closed 7 years ago
0
Update basic QC metrics to standard SQL.

#37 deflaux closed 7 years ago
0
Update query to reflect correct formula used for het_hom_ratio.

#36 deflaux closed 7 years ago
1
Fix label swaps.

#35 deflaux closed 8 years ago
1
Add query for metrics on multi-allelic "multi-sample variants" data.

#34 deflaux closed 8 years ago
1
Update links and add pointers to codelabs.

#33 deflaux closed 8 years ago
1
Divide p-value by 2

#32 deflaux closed 8 years ago
3
Update v1beta2 -> v1.

#31 deflaux closed 8 years ago
1
Update table names and re-render.

#30 deflaux closed 8 years ago
1
Add Yates's correction for continuity to chi-squared query.

#29 deflaux closed 8 years ago
0
Update all uses of BigQuery User-Defined Functions

#28 deflaux opened 9 years ago
0
Schema link is broken

#27 gideonite closed 9 years ago
3
Remove remaining references to obsolete 1,000 Genomes tables.

#26 deflaux closed 9 years ago
1
Fix typo in readme.

#25 mbookman closed 9 years ago
1
Please enable Tute annotation access via Google Could Storage

#24 pgrosu closed 9 years ago
2
Simplified allele count query.

#23 deflaux closed 9 years ago
0
Updated bigquery-examples content for 1,000 genomes to current variants schema

#22 deflaux closed 9 years ago
4
Add a schema transformation sample using Hadoop Streaming and the BigQuery Connector

#21 deflaux closed 9 years ago
1
Update the examples for recent bigrquery changes.

#20 craigcitro closed 10 years ago
9
Ensure that the Markdown, not RMarkdown, files display by default.

#19 deflaux closed 10 years ago
1
undercounting bug in gvcf_variants/allele-count.sql

#18 deflaux opened 10 years ago
0
Provide more reproducible details on provenance

#17 jbingham closed 9 years ago
2
update all 1,000 Genomes content to use phase 1 data exported from Variant Store

#16 deflaux closed 9 years ago
1
merge "the same" variant in gvcf_variants and gvcf_variants_expanded

#15 deflaux opened 10 years ago
0
scrub all queries for IF statements that can be simplified

#14 deflaux opened 10 years ago
0
optimize all queries using FLATTEN

#13 deflaux opened 10 years ago
3
understand why the CGI masterVar files have fewer non-reference alleles than the corresponding output from cgatools mkvcf

#12 deflaux closed 9 years ago
1
correct cgi-ref-blocks-mapper.py to also extract records for chrY and chrM

#11 deflaux closed 10 years ago
2
Update license to Apache

#10 madprime closed 10 years ago
1
Adding "Issues with the Variant Centric Approach" story

#9 madprime closed 10 years ago
1
Example query: Filtering CMS variants from 1kGenomes data set

#8 vdhankani closed 10 years ago
0
contig in variants1kG versus chrom in knownGene

#7 maxbox51 opened 10 years ago
0
Consider using the full version of ClinVar

#6 jaredroach closed 9 years ago
2
Unique keys in 1k genomes

#5 maxbox51 closed 10 years ago
1
Update README.Rmd

#4 erichhuang closed 10 years ago
3
Update README.md

#3 erichhuang closed 10 years ago
2
Query the BigGene variant data and create some basic plots of the data.

#2 chrisroat closed 10 years ago
9
modify ClinVar schema to utilize repeated fields

#1 deflaux closed 9 years ago
1