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gruber-sciencelab
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MAPP
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
https://github.com/gruber-sciencelab/MAPP
Apache License 2.0
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Downstream analysis after PAQR2
#35
grexor
opened
5 months ago
0
refactor: adjust final report; add full region scanning in CSM
#34
AngryMaciek
closed
6 months ago
0
Config parameters ignored while using precomputed shared resources
#33
AngryMaciek
opened
9 months ago
0
fix: correct the scaling variable for pwms in the report
#32
AngryMaciek
closed
9 months ago
0
refactor: final refactoring of the pipeline
#31
AngryMaciek
closed
9 months ago
0
refactor: update the HTML report
#30
AngryMaciek
closed
9 months ago
0
Update suppa.yml
#29
ajgruber
closed
6 months ago
1
docs: fix README typos
#28
AngryMaciek
closed
1 year ago
0
refactor: clarify README description
#27
AngryMaciek
closed
1 year ago
0
refactor: update README
#26
ajgruber
closed
1 year ago
0
docs: replace scheme for a new one
#25
AngryMaciek
closed
1 year ago
0
refactor: update zenodo link to example dataset
#24
AngryMaciek
closed
1 year ago
0
refactor: include new cool repo mechanisms
#23
AngryMaciek
opened
1 year ago
0
feat: add TPM averaging flag to MAEI
#22
AngryMaciek
closed
1 year ago
1
docs: specify env activation outside a script
#21
AngryMaciek
closed
1 year ago
0
refactor: adjust `--cores` settings for profiles
#20
AngryMaciek
closed
1 year ago
5
feat: specify options for precomputed env/containers top-lvl
#19
AngryMaciek
closed
2 years ago
0
refactor: fix minor comments collected along the way
#18
AngryMaciek
closed
2 years ago
0
feat: add Sun Grid Engine support
#17
AngryMaciek
closed
2 years ago
0
refactor: fix ASE cassette exon selection
#16
AngryMaciek
closed
2 years ago
0
feat: add sge singularity profile
#15
AngryMaciek
opened
2 years ago
4
feat: support use of shared conda envs / singularity containers
#14
AngryMaciek
closed
2 years ago
0
refactor: collect minor comments
#13
AngryMaciek
closed
2 years ago
1
feat: experimental macOS support
#12
AngryMaciek
opened
2 years ago
1
Minor comments
#11
AngryMaciek
closed
2 years ago
0
refactor: add minor collected changes
#10
AngryMaciek
closed
2 years ago
1
bugfix: change compression format to tar.gz
#9
AngryMaciek
closed
2 years ago
1
ci: move from GitLab CI to GitHub Actions
#8
AngryMaciek
closed
2 years ago
0
refactor the final HTML report
#7
AngryMaciek
opened
2 years ago
1
refactor impact maps
#6
AngryMaciek
opened
2 years ago
0
feat: add github issues templates, CoC, CODEOWNERS
#5
AngryMaciek
closed
2 years ago
0
ci: add GH Actions CI mechanism
#4
AngryMaciek
closed
2 years ago
1
feat: include bzip2 in conda envs, adjust logo
#3
AngryMaciek
closed
2 years ago
0
Code Owner specification
#2
AngryMaciek
closed
2 years ago
0
git: add clean version from GitLab
#1
AngryMaciek
closed
2 years ago
0