gustavdelius mizer issues

gustavdelius / mizer

This is my old mizer fork that is not actively used any more but still has lots of material in its many branches.

http://gustavdelius.github.io/mizer/

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issues

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Merge from upstream

#99 gustavdelius closed 4 years ago
0
Pull updates from official mizer

#98 gustavdelius closed 4 years ago
0
Merging upstream changes

#97 gustavdelius closed 5 years ago
0
Create setRecruitment() function

#96 gustavdelius closed 5 years ago
1
Create pdf vignette from website

#95 gustavdelius closed 4 years ago
1
Write tests for getDiet()

#94 gustavdelius closed 5 years ago
0
Update calculation of default gamma to take into account resources

#93 gustavdelius closed 2 years ago
4
Detritus

#92 gustavdelius closed 5 years ago
0
Deal with NAs in species params dataframe consistently

#91 gustavdelius closed 5 years ago
0
Check arguments to functions using assert_that

#90 gustavdelius closed 3 years ago
0
Rename functions for consistency and expressiveness

#89 gustavdelius closed 3 years ago
1
Speed comparison to old code

#88 gustavdelius opened 6 years ago
1
Create function to allow user to actually launch shiny apps

#87 gustavdelius closed 5 years ago
1
Let user specify the parameters for the psi curve in MizerParams()

#86 gustavdelius closed 5 years ago
0
Let app allow upload of size at age data

#85 gustavdelius opened 6 years ago
0
Allow arbitrary feeding kernel

#84 gustavdelius closed 5 years ago
3
SSB in mizer is not Spawning Stock Biomass

#83 gustavdelius closed 5 years ago
0
Add a function to be able to download files from app

#81 richardsouthwell closed 6 years ago
1
Document and debug handling of linecolour and linetype

#80 gustavdelius closed 4 years ago
1
investigate how small dt needs to be

#79 richardsouthwell opened 6 years ago
1
Remove background species when their abundance gets low

#78 gustavdelius closed 6 years ago
1
Remove plankton cutoff from plotSpectra

#77 gustavdelius closed 2 years ago
1
Make code explain error when l25=250

#76 richardsouthwell closed 6 years ago
0
Write more tests of numerical scheme

#75 gustavdelius opened 6 years ago
0
Include Newton-Raphson and Jacobian

#74 richardsouthwell opened 6 years ago
1
sort out plotting problems

#73 richardsouthwell closed 5 years ago
0
failing growth curve code

#72 richardsouthwell closed 5 years ago
0
Extend addSpecies for adding multiple species at once

#71 gustavdelius closed 4 years ago
0
Allow multiple gears per species

#70 gustavdelius closed 4 years ago
1
Use same discretisation scheme in set_scaling_model as in project

#69 gustavdelius closed 3 years ago
1
Unit test for addSpecies

#68 gustavdelius closed 6 years ago
0
Allow side-by-side comparison of plots from different simulations, using the same axes.

#67 gustavdelius closed 2 years ago
2
Allow MizerParams and MizerSim objects to have Titles

#66 gustavdelius closed 5 years ago
1
Make plots faster by including fewer w points

#65 gustavdelius closed 4 years ago
1
Enable plotYield to compare the yield from two simulations.

#64 gustavdelius closed 6 years ago
2
Enable plotYield to compare the yield from two simulations

#63 gustavdelius closed 6 years ago
0
Improvements to scaling model and plotting

#62 gustavdelius closed 6 years ago
0
Improvements to plots

#61 gustavdelius closed 6 years ago
0
modifying and installing mizer locally

#60 astaaudzi closed 6 years ago
5
remake example for add_species

#58 richardsouthwell closed 6 years ago
0
growth curve mystery

#57 richardsouthwell closed 5 years ago
0
Improve mizer plot functions so that they give units on the axes

#56 gustavdelius closed 6 years ago
0
Create a plot function for comparing growth curves.

#55 gustavdelius closed 6 years ago
2
Understand and implement how to choose parameters to achieve given growth curve

#54 gustavdelius closed 5 years ago
0
Make add_species() more user-friendly

#53 gustavdelius closed 6 years ago
4
Automatically deal with extinct background species in add_species()

#52 gustavdelius closed 6 years ago
2
Improve handling of r_max = Inf in add_species()

#51 gustavdelius closed 6 years ago
0
Create subclass of MizerParams class for the scaling model parameters with extra slots

#50 gustavdelius opened 6 years ago
0
Adsp

#49 richardsouthwell closed 6 years ago
0
Adding one unit test for set_scaling_model and fixing dimensions of erepro

#48 gustavdelius closed 6 years ago
0