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gymreklab
/
GangSTR
A tool for profiling long STRs from short reads
GNU General Public License v2.0
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STR info example
#78
Phillip-a-richmond
closed
5 years ago
1
WARNING: Region exceeds maximum total processed reads per sample.
#77
shenweima
closed
5 years ago
1
Fix read length and drop-dupes
#76
mikmaksi
closed
1 year ago
0
Error when using dumpSTR
#75
gspirito
closed
5 years ago
1
adjust wgsim & bwa order of command-line args
#74
bw2
closed
5 years ago
0
Remove trailing whitespace from ENCLREADS and FLNKREADS in VCF output
#73
gymreklab
closed
5 years ago
1
how to calculate off-target loci
#72
bw2
closed
5 years ago
3
Unable to download Target TR loci for hg38
#71
alexandraweb
closed
5 years ago
2
Added ENCLREADS and FLNKREADS to vcf
#70
nmmsv
closed
5 years ago
0
reported low number of copies for the known expansion
#69
bharatij
closed
5 years ago
9
Added max processed reads per sample to avoid getting stuck in telomeres
#68
nmmsv
closed
5 years ago
0
Updates to scripts
#67
nmmsv
closed
5 years ago
0
Added experimental directory with ref generation script
#66
nmmsv
closed
5 years ago
0
fixed issues with --bam-samps and manual setting of insert size
#65
nmmsv
closed
5 years ago
0
Request: parameter for input file containing bam files
#64
complexgenome
opened
5 years ago
1
Adding cram support
#63
gymreklab
closed
5 years ago
0
minor change in command line options
#62
nmmsv
closed
5 years ago
0
Out of range error when trying to compute ins/sdev on regions with no reads
#61
gymreklab
opened
5 years ago
0
Help reading output (Genotype given in bp difference from reference)
#60
sngo318
closed
5 years ago
2
changed some default options
#59
nmmsv
closed
5 years ago
0
Updating readme.
#58
nmmsv
closed
5 years ago
0
Bug fixes
#57
nmmsv
closed
5 years ago
0
script for trimming reference repeats?
#56
bw2
closed
5 years ago
2
Bug fixes
#55
gymreklab
closed
5 years ago
0
Typo "calling"
#54
ileenamitra
closed
5 years ago
0
Added Qscore and PERIOD to VCF
#53
nmmsv
closed
5 years ago
0
modified README.md to include gcc versions
#52
richyanicky
closed
5 years ago
0
corrected both the const and boolen compiler issue
#51
richyanicky
closed
5 years ago
0
Speedup
#50
nmmsv
closed
5 years ago
0
Adding GL scores
#49
gymreklab
closed
5 years ago
0
Request: add to bioconda
#48
wdecoster
closed
3 years ago
9
Installation error and doubts for libraries installed
#47
complexgenome
closed
5 years ago
15
Grid
#46
nmmsv
closed
5 years ago
0
Grid
#45
gymreklab
closed
5 years ago
0
Multisample
#44
gymreklab
closed
5 years ago
0
Added standard error to VCF
#43
nmmsv
closed
5 years ago
0
Running in parallel by splitting hs37_ver8.bed
#42
npatel22526
closed
5 years ago
2
reference .bed files should have 0-based start coordinate
#41
bw2
opened
5 years ago
2
Created sample struct | Merging branch Develop
#40
nmmsv
closed
5 years ago
0
Fixed memory issues
#39
nmmsv
closed
5 years ago
0
Multisample
#38
gymreklab
closed
5 years ago
0
Updates to model for better calling in simulation
#37
nmmsv
closed
5 years ago
0
hg38_ver5.bed.gz not in sorted order
#36
jjfarrell
closed
5 years ago
1
Cram Support
#35
jjfarrell
closed
5 years ago
3
GangSTR gives very high GB values. Possibly related to piling FRRs
#34
Matthlas
closed
5 years ago
3
No Locus contains enough reads to extract read length
#33
seunghun23
closed
5 years ago
9
Erroneuos results: GB value lies outside of the confidence interval and is unreasonably high
#32
Matthlas
closed
5 years ago
1
Pre-defined off-target loci for target pathogenic loci links are not working
#31
SergeyPhys
closed
6 years ago
3
terminate called after throwing an instance of 'std::out_of_range'
#30
faithman
closed
5 years ago
5
added lines to README
#29
richyanicky
closed
6 years ago
0
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