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gymreklab
/
GangSTR
A tool for profiling long STRs from short reads
GNU General Public License v2.0
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--max-proc-read default
#128
yangxy289
opened
4 weeks ago
0
When I try to install GangSTR, I always encounter this problem repeatedly during the ‘make’ step
#127
beixuancheng
opened
1 month ago
0
bed file format
#126
dwill023
opened
6 months ago
0
Annotate the output with STRbase/13 CORDIS core
#125
csittz
opened
11 months ago
0
Can't get past htslib update step when trying to build GangSTR
#124
jsquaredosquared
closed
11 months ago
1
chr_make_reference.sh: line 11: =X: command not found
#123
kimi-du-bio
opened
1 year ago
0
[GangSTR-2.5.0] ERROR: Error extracting read length
#122
jackzhong1995
opened
1 year ago
1
generate str_info_file
#121
sy8645
opened
1 year ago
0
local realignment in GangSTR
#120
kirannai
opened
1 year ago
0
Help : Genotyping vcf results (loci call & Realignment resutls)
#119
kirannai
opened
1 year ago
0
Allowing mismatch in Long str
#118
DomManou
opened
2 years ago
0
Alleles reported as numbers rather than bases in output VCF
#117
alexpiper
opened
2 years ago
0
Support for unequal read lengths in BAM
#116
dboceck
opened
2 years ago
0
MarkDuplicates reads filter
#115
zhpn1024
opened
2 years ago
0
Issue about "Not enough reads extracted. Skipping locus.."
#114
tanlaboratory
opened
2 years ago
1
error after trimming sequences
#113
CocoMlle
opened
2 years ago
0
HELP
#112
zhangjinpengGithub
opened
3 years ago
3
Help with understanding GGL values
#111
hchetia
closed
3 years ago
4
Warning in Gangstr run
#110
hchetia
closed
3 years ago
3
genome index
#109
hchetia
closed
3 years ago
1
Read group
#108
hchetia
closed
3 years ago
1
[GangSTR-2.5.0] ERROR: Error extracting read length
#107
MeiShu00
closed
3 years ago
8
str::out_of_range
#106
mvcakir
opened
3 years ago
2
Downstream filtering for haploid TRs
#105
Owuorgpo
opened
3 years ago
4
GangSTR --help outputs error
#104
MeiShu00
opened
3 years ago
0
GangSTR fails on small input files
#103
bkohrn
opened
3 years ago
3
Cmake branch
#102
nmmsv
closed
3 years ago
0
Interesting Compiling issue
#101
MrDotOne
closed
3 years ago
6
Crash soon after started
#100
huanglu2018
closed
3 years ago
1
[GangSTR-2.4.6] ERROR: No read group specified in BAM file
#99
archana433
closed
3 years ago
1
munmap_chunk(): invalid pointer
#98
mvcakir
closed
3 years ago
4
Fix segfault on Ubuntu 20.04
#97
jmarshall
closed
3 years ago
1
Reference .bed file difference
#96
apredeus
closed
3 years ago
2
Expansions detection
#95
leorebensabath
closed
3 years ago
3
Merging develop
#94
nmmsv
closed
4 years ago
0
Crashing something about size
#93
sequinstandards
closed
3 years ago
1
Seg fault error on Ubuntu 20.04
#92
ileenamitra
closed
3 years ago
6
REPCN number is incorrect for x chromosome
#91
LiterallyUniqueLogin
opened
4 years ago
0
Add sex chr support
#90
nmmsv
closed
4 years ago
1
Cannot build with the latest version
#89
Z-Zen
closed
4 years ago
4
Using GangSTR on HiFi PacBio reads
#88
olekto
closed
4 years ago
1
What is the total processed reads per sample for a region?
#87
ontalin
closed
4 years ago
3
ERROR: Not enough reads for [sample ID]. Please set insert size distribution manually.
#86
shiyirong
opened
4 years ago
10
Added ReadEndMatchState to avoid flanking reads that don't have repet…
#85
nmmsv
closed
4 years ago
0
Merging current state of develop into master
#84
nmmsv
closed
4 years ago
0
Fixing bugs in local realignment when flanking region matches the repeat
#83
gymreklab
closed
4 years ago
2
adding sample info to output read info
#82
gymreklab
closed
4 years ago
0
Key Error from REF and ALT fields when running DumpSTR on GangSTR vcf file
#81
BonnieCSE
opened
4 years ago
5
Fix log message in install-gangstr.sh
#80
Oodnadatta
closed
4 years ago
1
Verify checksums for files downloaded over ftp or http
#79
Oodnadatta
opened
4 years ago
1
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