halelab GBS-SNP-CROP issues

halelab / GBS-SNP-CROP

GBS SNP Calling Reference Optional Pipeline

GNU General Public License v2.0

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issues

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Unable to download tutorial dataset

#36 phlatphish opened 9 months ago
0
there are some errors in step1

#35 maizecxwu opened 1 year ago
0
[Fixed]Path to BWA&SAMtools executable file

#34 ewail closed 2 years ago
0
[fixed] Path to VSEARCH executable file.

#33 ewail closed 2 years ago
0
Corrected ReadMe Typos, Issue #31

#32 nmacneil closed 2 years ago
0
Some semi-important typos in readme

#31 SethMusker closed 2 years ago
0
Creation of VerticalRefPos.txt file

#30 fischuu opened 4 years ago
1
System can't save *.R1.fa.gz

#29 rhasbunz closed 2 years ago
1
VCF file only partially tab delimited

#28 rbrauning opened 4 years ago
1
Step 4 using tutorial data, failing?

#27 angelaparodymerino closed 2 years ago
1
Halelab patch 1

#26 halelab closed 4 years ago
0
Can't exec "usr/local/bin/vsearch": No such file or directory at GBS-SNP-CROP-4.pl line 265. Unable to open VsearchOUT.fa file

#25 angelaparodymerino closed 4 years ago
2
Empty output files in STEP 5 (Tutorial data)

#24 angelaparodymerino closed 4 years ago
1
2 Error, too large read? Allocate more mem...Illegal division by zero at GBS-SNP-CROP-4.pl line 218.

#23 angelaparodymerino closed 4 years ago
3
Get zero bytes of L001_R1parsed.merged.fq.gz after step 2

#22 SHU-YUN closed 4 years ago
0
Failed to open files.. Illegal division by zero at GBS-SNP-CROP-4.pl line 218

#21 angelaparodymerino closed 4 years ago
5
Fix description of AD field

#20 lvclark closed 2 years ago
1
CaN GBS-SNP-CROP be used with ION torrent?

#19 jshleap closed 5 years ago
3
Update GBS-SNP-CROP-4.pl

#18 arthurmelobio closed 5 years ago
1
Update GBS-SNP-CROP-2.pl

#17 arthurmelobio closed 5 years ago
0
Update GBS-SNP-CROP-2.pl

#16 arthurmelobio closed 6 years ago
0
Expand step 4

#15 ne1s0n closed 6 years ago
2
Added Trimmomatic as parameter in v3

#14 ne1s0n closed 6 years ago
1
Link to download Pear and licensing have changed

#13 dsenalik closed 6 years ago
1
Step#3: demultiplex

#12 cryptic0 closed 7 years ago
1
Option to Specify Output Needed

#11 andydish closed 7 years ago
1
Proper restriction enzyme sequence for single enzyme experiment using ApeKI

#10 charlesdavid closed 7 years ago
6
The tutorial is not runnable...

#9 ALTree closed 7 years ago
2
Step3.Demultiplexing_message_all_Done_but_empty_fastq_outputs

#8 el42008 closed 8 years ago
2
descriptiveOut

#7 arthurmelobio closed 8 years ago
0
ploidy table

#6 arthurmelobio closed 8 years ago
0
directory structure

#5 arthurmelobio closed 8 years ago
0
SNP genotyping matrix

#4 arthurmelobio closed 8 years ago
0
User Manual v.1.1

#3 arthurmelobio closed 8 years ago
0
workflow_PE_SE

#2 arthurmelobio closed 8 years ago
0
Tutorial reformatted as Markdown

#1 nathanhaigh closed 8 years ago
2