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hall-lab
/
svtyper
Bayesian genotyper for structural variants
MIT License
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Svtyper does not support TRA type.
#128
pingxinxing
opened
2 months ago
0
Warning: Unsupported SVTYPE at variant MantaBND:93:0:1:0:1:0:0 (TRA). Skipping.
#127
pingxinxing
opened
2 months ago
0
KeyError: 'RG'
#126
karen916
opened
10 months ago
0
how to filter SV using the "QUAL" threshold
#125
jackzhong1995
opened
1 year ago
0
Reference calls with no support and missing calls
#124
aariani
opened
3 years ago
0
I have question about Genotype information in SVtyper output
#123
u1200538
opened
3 years ago
0
Issue while running the executable.
#122
kghimire09
opened
3 years ago
5
SVtyper on lumpy traditional vcf
#121
nitinra
closed
3 years ago
1
update for original paper link
#120
esolares
opened
3 years ago
0
Error during setup
#119
rsolano1-uw
closed
3 years ago
2
Error: invalid FORMAT field, "+"
#118
edgarsierraorozco
opened
3 years ago
0
The meaning of the parameters
#117
tyyiyi
opened
4 years ago
0
Precise breakpoints
#116
biozzq
opened
4 years ago
0
Failed to build insert size histogram for paired-end reads.
#115
tirohia
opened
4 years ago
0
Key Error(s) being thrown for various call sets in C elegans
#114
moldach
opened
4 years ago
0
annotate translocations with svtyper
#113
jazberna1
opened
4 years ago
2
Update svtyper to count reads at breakpoints separately
#112
anju24
closed
4 years ago
1
Fixed #103 (KeyError: 'CIPOS')
#111
mchowdh200
opened
4 years ago
6
update for python 3
#110
brentp
opened
4 years ago
0
recommendation for numpy version for svtyper 0.7.1
#109
kgaonkar6
opened
4 years ago
0
How to understand the output genotyped from svtyper?
#108
xujinshengjsxu
opened
4 years ago
0
Get the last > char
#107
apregier
closed
4 years ago
0
is there a clear pipline for paired or tumor-only and json file is what? thanks a lot
#106
wentgithub
opened
5 years ago
0
header parsing can't handle ">" in description
#105
brentp
opened
5 years ago
3
svtyper-sso can not deal with multiple bam files?
#104
verne91
opened
5 years ago
0
KeyError: 'CIPOS'
#103
verne91
opened
5 years ago
1
How to merge the vcfs from different samples?
#102
verne91
closed
5 years ago
1
On making precision-recall curves: quality info? lenient parameters?
#101
jmonlong
opened
5 years ago
0
Does svtyper calculate read pairs which have long overlap twice?
#100
xyw1
opened
5 years ago
0
SVtyper questions / issues
#99
calhoujd
opened
5 years ago
0
Question about parameter 'max_reads' of classic svtyper.
#98
lss1227
opened
5 years ago
0
v0.7.0
#97
ernfrid
closed
5 years ago
0
improve svtyper speed by ~30%
#96
brentp
closed
5 years ago
3
Best FORMAT field for filtering SVTyper Output
#95
andrewSharo
opened
5 years ago
2
SVtyper for SNVs/indels
#94
fpbarthel
closed
5 years ago
2
Create svtyper-parallel
#93
dvanderleest
opened
5 years ago
0
Multi core functionality missing for multisample projects
#92
dvanderleest
closed
5 years ago
3
Lack of support for (b)gzipped vcf files and analysing only part(s) of the files (region support)
#91
dvanderleest
opened
5 years ago
4
Question about DP
#90
panzhaodong123
opened
6 years ago
1
What's the meaning of QUAL = 0? is there an option to add -q to the Speedseq SV pipeline?
#89
Sithara85
opened
6 years ago
1
bamfile without index
#88
btoe
opened
6 years ago
3
Can I use svtyper to genotype Hydra output?
#87
jiangyuanluo
closed
6 years ago
1
svtyper on tumor/normal pair, which BAM to supply
#86
fpbarthel
closed
6 years ago
3
Running SVTyper on any SV tool
#85
mej54
opened
6 years ago
8
output AD for depth
#84
brentp
opened
6 years ago
0
Port code to python3 and add parallelization per individual
#83
florealcab
opened
6 years ago
0
Stub in code for toggling use of 95 pct confidence interval
#82
ernfrid
closed
5 years ago
1
problem in running svtyper
#81
ytguojian
closed
6 years ago
4
if CI is too big, use CI95
#80
brentp
closed
5 years ago
12
Fix bnd warning conditional
#79
ernfrid
closed
6 years ago
0
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