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hiclib
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pastis
Poisson-based algorithm for stable inference of DNA Structure
http://hiclib.github.io/pastis/
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Integrating diploid code
#58
NelleV
closed
4 years ago
0
FIX + MAINT upgraded iced + testing on python 3.8
#57
NelleV
closed
4 years ago
0
MAINT+FIX travis-ci and version of packages
#56
NelleV
closed
4 years ago
0
IOError: ./2.PM2.structure.pdb.txt not found.
#55
drbinguo
closed
4 years ago
4
questions about running the test
#54
PACOYANG2019
closed
4 years ago
2
MAINT Switching to pytest for testing
#53
NelleV
closed
4 years ago
0
FIX travis
#52
NelleV
closed
4 years ago
0
Integrating diploid code: callbacks module
#51
gesinecauer
closed
4 years ago
6
Does Pastis have a parameter for specifying nucleus size?
#50
danextreme
opened
4 years ago
3
Diploid inference
#49
gesinecauer
closed
4 years ago
0
Question about the output of example data
#48
QianzhaoJ
opened
5 years ago
0
Simulating HiC data
#47
tarak77
closed
5 years ago
1
Pastis execution validation
#46
oluwatosin-oluwadare
opened
5 years ago
0
FIX installation, finally, maybe?
#45
NelleV
closed
5 years ago
0
Adding gallery to documentation
#44
NelleV
closed
5 years ago
0
FIX py3k dict API changed?
#43
NelleV
closed
5 years ago
0
Travis-ci does not actually install the package
#42
NelleV
opened
6 years ago
0
FIX installation problems
#41
NelleV
closed
6 years ago
0
Install/running problem- ./MDS.sh: 1: ./MDS.sh: MDS_all: not found
#40
hanfu-bios
opened
6 years ago
9
Doc
#39
NelleV
closed
6 years ago
0
Metrics
#38
NelleV
closed
3 years ago
0
Better bug fix: setting beads with 0 counts to NAN
#37
gesinecauer
opened
6 years ago
0
Centering PASTIS output
#36
gesinecauer
opened
6 years ago
0
Viewing the PDB file
#35
aakashsur
opened
6 years ago
1
for HiC-3DViewer
#34
rysterzhu
opened
6 years ago
1
Stop beads from being erroneously removed after inference
#33
gesinecauer
closed
6 years ago
2
Fixing normalization bug
#32
gesinecauer
closed
6 years ago
0
No src/ directory in master
#31
DeltaMethod721
closed
6 years ago
2
Install error
#30
jmsong2
closed
5 years ago
3
FIX ini can now be a list
#29
NelleV
closed
6 years ago
0
Ticket 25: now support non-zero entries on the diagonal
#28
NelleV
closed
6 years ago
0
Python3 compat
#27
NelleV
closed
6 years ago
0
Preparing release
#26
NelleV
closed
2 years ago
0
Please add support for diagonal entries
#25
lewkrr
closed
6 years ago
0
an error in new version
#24
lhanappa
closed
6 years ago
0
FIX load length now orders properly even with recent versio of numpy
#23
NelleV
closed
7 years ago
0
Updates from minorswing
#22
NelleV
closed
7 years ago
0
Adding NB model
#21
NelleV
closed
7 years ago
0
Py3k
#20
NelleV
closed
2 years ago
0
Output 3D co-ordinates in PDB format as was done by coords.cpp
#19
gbonora
closed
7 years ago
3
Annotation of pdb
#18
robinweide
opened
8 years ago
1
Now dense example works
#17
NelleV
closed
8 years ago
0
Added pandas
#16
NelleV
closed
8 years ago
0
Added non-metric MDS
#15
NelleV
closed
8 years ago
0
Added continuous_integration folder
#14
NelleV
closed
8 years ago
0
Remove ipopt 2
#13
NelleV
closed
8 years ago
0
Remove ipopt
#12
NelleV
closed
8 years ago
0
Remove some dependencies and some bug fixing.
#11
NelleV
closed
8 years ago
0
DOC better explanation on PDB vs txt results
#10
NelleV
closed
8 years ago
0
Many points located at (100,100,100)
#9
sirusb
closed
8 years ago
2
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