issues
search
hyattpd
/
Prodigal
Prodigal Gene Prediction Software
GNU General Public License v3.0
432
stars
85
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
New version discussion: input/output formats
#63
hyattpd
opened
4 years ago
10
New version discussion: genetic codes
#62
hyattpd
opened
4 years ago
5
[regression in 2.60] The 'install' target is gone from Makefile
#61
yurivict
closed
4 years ago
2
Twitter asks if this project is still alive
#60
tseemann
closed
4 years ago
5
gene length cutoff
#59
DaanJansen94
closed
4 years ago
3
I forgot to pass the -d option...will I have to rerun
#58
slvrshot
closed
5 years ago
1
Use -p single or -p meta for metagenomic bins
#57
SarahIsme
closed
4 years ago
3
Unsafe code
#56
danilexn
closed
4 years ago
2
Support consuming compressed files.
#55
dnbaker
closed
4 years ago
1
Sequence too long (max 32000000 permitted).
#54
faylward
closed
4 years ago
4
percent of genes predicted in a metagenome?
#53
Jigyasa3
closed
4 years ago
3
Performance impacted by word wrap length
#52
aaronmussig
closed
4 years ago
4
Error: Sequence must be 20000 characters (only 13949 read).
#51
vinisalazar
closed
5 years ago
2
Issue installing Prodigal through Brew on Mac Mojave 10.14
#50
crmclean
closed
4 years ago
2
tmp filename collision
#49
nigiord
closed
4 years ago
4
Alternative start codons (annotating plant mitochondrial genomes)
#48
sjackman
closed
5 years ago
2
Annotating vertebrate mitochondrial genomes
#47
sjackman
closed
4 years ago
3
free(): invalid pointer: 0x00007f8b8602b010
#46
avu0
closed
6 years ago
3
prodigal 3 not predicting any genes in anon mode
#45
mhuntemann
closed
5 years ago
3
Alternate start codons
#44
raphenya
closed
6 years ago
4
prodigal.windows.exe
#43
DamirG5
closed
6 years ago
1
Can I use a training file for metagenomic contigs?
#42
ohmiya
closed
6 years ago
1
Make a new release?
#41
tseemann
closed
4 years ago
8
Is Prodigal Still Running?
#40
altaetran
closed
4 years ago
1
Warning when compiling on Linux
#39
nigiord
closed
4 years ago
2
Invalid Pointer Error
#38
avu0
closed
4 years ago
4
Convert between output formats
#37
aersoares81
closed
6 years ago
2
Broken website link
#36
yesimon
closed
4 years ago
4
Fix undefined behavior leading to differences in output
#35
unode
closed
6 years ago
0
Undefined behavior leads to different program outputs when compiled with GCC 4-6 vs GCC 7
#34
unode
closed
6 years ago
3
Compare outputs of different runs with same input data
#33
avu0
closed
4 years ago
3
Wouldn't work with Eukaryotic genomes?
#32
chamalis
closed
6 years ago
2
Feature Request: custom translation table
#31
jolespin
closed
4 years ago
17
Running with '-m' still predicts genes across regions of N
#30
johnne
closed
4 years ago
9
No partial tag using metaProdigal
#29
jwidmann
closed
7 years ago
2
Translated peptide frame information
#28
narsapuramvijaykumar
closed
7 years ago
3
upper limit
#27
raphenya
closed
6 years ago
1
Bioconda
#26
davidvilanova
closed
7 years ago
2
Minimum length of gene
#25
ghost
closed
7 years ago
3
Mac Download
#24
Jenn-Hathaway
closed
7 years ago
0
osx executable?
#23
cslamo
closed
8 years ago
1
Restrict start codons to AUG
#22
sjackman
closed
5 years ago
4
Millions of null characters (\x00) inserted into called gene
#21
smdabdoub
closed
8 years ago
2
CUDA?
#20
smk508
closed
8 years ago
2
meta mode and translation table 4
#19
tseemann
closed
4 years ago
5
Revert "Added target to Makefile to build static executable"
#18
hyattpd
closed
8 years ago
0
Partial protein Methionine
#17
jjkoehorst
closed
8 years ago
8
Added target to Makefile to build static executable
#16
neurotensin
closed
8 years ago
0
gene prediction labeled as partial if it starts at contig edge
#15
VidJa
closed
9 years ago
1
Unix binary provided doesn't work (wrong GLIBC)
#14
xapple
closed
8 years ago
1
Previous
Next