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icbi-lab
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nf-deseq2
A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.
BSD 2-Clause "Simplified" License
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Fix multiple emit
#39
vjmarteau
opened
2 years ago
0
Add reshape2 package
#38
vjmarteau
closed
2 years ago
0
Claudia steinacher patch 1
#37
ClaudiaSteinacher
closed
2 years ago
0
Option to run pipeline for human/mouse/etc.
#36
vjmarteau
opened
2 years ago
0
Remove paste0 fkt
#35
vjmarteau
closed
2 years ago
0
use params.resDir as publishDir
#34
riederd
closed
2 years ago
1
put publish dir logic into main config file
#33
riederd
opened
2 years ago
0
Multiple emit
#32
riederd
closed
2 years ago
1
Add module for variancePartition
#31
vjmarteau
opened
2 years ago
2
Update gitignore and editorconfig
#30
grst
closed
2 years ago
1
Add gene set analysis with over-representation test (ORA)
#29
grst
closed
2 years ago
0
Add GO_TOPGO_R_Script
#28
ClaudiaSteinacher
closed
2 years ago
2
Samplesheet preprocess
#27
ZuzanaLoncova
opened
2 years ago
1
Update DESeq2.nf
#26
grst
closed
2 years ago
1
Add PCA module
#25
Raphael-Gronauer
closed
2 years ago
4
CI: Output log on failure
#24
grst
closed
2 years ago
0
auto-determine publish mode
#23
riederd
opened
2 years ago
2
Generate input channels from params
#22
grst
closed
2 years ago
1
Add module volcano plot
#21
vjmarteau
closed
2 years ago
2
Merge req for DESeq2 module
#20
sandrocarollo
closed
2 years ago
2
added empty BiotypeQC.nf script to modules
#19
ausserh
closed
2 years ago
1
Add module to optionally run RUVSeq and/or SVA
#18
riederd
opened
3 years ago
0
Add input and output documentation
#17
grst
opened
3 years ago
0
Add module that generates HTML report
#16
grst
opened
3 years ago
0
Add module for BioQC
#15
grst
opened
3 years ago
1
Add module for Progeny
#14
grst
opened
3 years ago
0
Add module for Dorothea
#13
grst
opened
3 years ago
0
Add module for volcano plots
#12
grst
closed
2 years ago
0
Add module for PCA
#11
grst
closed
2 years ago
1
Add support for custom signatures for GSEA/ORA
#10
grst
opened
3 years ago
0
Add module for GSEA analysis with clusterProfiler
#9
grst
opened
3 years ago
0
Add module for Pathway enrichment analysis with ClusterProfiler (Over representation test, ORA)
#8
grst
closed
2 years ago
0
Add Module for GO enrichment analysis with TOPGO
#7
grst
closed
2 years ago
1
Add module for Biotype QC
#6
grst
opened
3 years ago
0
Overall functionality
#5
grst
opened
3 years ago
0
Add module to check and preprocess samplesheet
#4
grst
opened
3 years ago
1
Add module for DESeq2
#3
grst
closed
2 years ago
1
Fix CI script
#2
grst
closed
3 years ago
0
Enable Tests and CI
#1
grst
closed
3 years ago
0