janelia-flyem gala issues

janelia-flyem / gala

Automatic segmentation of electron microscopy volumes

BSD 3-Clause "New" or "Revised" License

75 stars 29 forks source link

issues

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gala.sparselol_cy

#100 SandmanSpartan opened 2 years ago
1
pip installs another package called gala

#99 jingpengw opened 3 years ago
7
Update gala to be compatible with networkx 2 and other modern libs

#98 jni closed 3 years ago
0
Request Docker image or updated version of GALA

#97 Khoa-NT opened 3 years ago
15
Where and why to ignore 0 in VI?

#96 Keep-Passion closed 3 years ago
3
help me new to python

#95 BOOM5s closed 3 years ago
1
Package miscellaneous files

#94 jakirkham closed 3 years ago
2
Include tests for image_type

#93 JohnnyTeutonic opened 7 years ago
6
Launch gala server from command line

#92 jni closed 7 years ago
0
New function to accept multiple images for segmentation

#91 JohnnyTeutonic closed 7 years ago
29
Change docstring for rand_values

#90 JohnnyTeutonic closed 7 years ago
1
Remove bug in ARE in evaluate.py

#89 JohnnyTeutonic closed 7 years ago
15
Fix VTK file IO

#88 jni closed 7 years ago
1
[WIP] communication protocol with BigDataViewer proofreading client

#87 jni closed 7 years ago
2
Ensure `agglo.Rag.separate_fragments` leaves a consistent graph

#86 jni opened 8 years ago
0
Add functions to read and write volumes with CREMI's HDF5 format

#85 jni closed 8 years ago
1
Implement @mjanusz's edge batching

#84 jni closed 8 years ago
2
unexpected keyword argument 'random_state'

#83 thanujadax closed 8 years ago
2
Speedup

#82 jni closed 8 years ago
1
agglo.py runtime warning and and unmerged output

#81 thanujadax closed 8 years ago
10
Explore zarr as a back-end for Gala labeled arrays

#80 jni opened 8 years ago
0
Benchmark building ijv triplets from CSR

#79 jni opened 8 years ago
0
Some bug fixes and speed improvements

#78 jni closed 8 years ago
0
errors while running py.test

#77 ajavvadi closed 7 years ago
7
Fix test_serve to use two threads, one for server and one for proofreader

#76 jni opened 8 years ago
0
Update dependencies

#75 jni closed 8 years ago
0
Bugfixes

#74 tobiasmaier closed 8 years ago
1
Rag.split_vi() broken

#73 tobiasmaier closed 8 years ago
0
Rag.set_ground_truth() broken

#72 tobiasmaier closed 8 years ago
0
agglo.best_possible_segmentation()

#71 tobiasmaier closed 8 years ago
0
Add CITATION file

#70 jni closed 8 years ago
0
Find way to activate long testing in Travis easily

#69 jni opened 8 years ago
2
[MRG] Add ZMQ solver and simulated client

#68 jni closed 8 years ago
0
Fix behavior of contingency table ignored rows

#67 jni closed 8 years ago
0
Ignored rows should still be created in evaluate.contingency_table

#66 jni closed 8 years ago
0
Add functions for training on multiple volumes

#65 jni opened 8 years ago
0
Fix learning mode

#64 jni closed 8 years ago
0
`_learn_agglomerate` doesn't use learning mode

#63 jni closed 8 years ago
7
Add CONTRIBUTING.md file

#62 jni opened 8 years ago
0
Remove Python 2.7 support

#61 jni closed 8 years ago
1
Add PyPI classifiers to setup

#60 jni closed 8 years ago
0
Add two default feature managers

#59 jni closed 8 years ago
0
Allow use of DVID volumes as back-end

#58 jni opened 8 years ago
3
Select best classifier using auto-sklearn

#57 jni opened 8 years ago
0
Fix README URL for PLoS One article

#56 jefferis closed 8 years ago
1
Further changes to reduce memory footprint

#55 jni closed 8 years ago
0
Reduce memory usage and speed up computation

#54 jni closed 9 years ago
2
Remove support for 0-labeled boundaries

#53 jni closed 9 years ago
0
KeyError when adding boundary with label 0 in oversegmentation

#52 neptunes5thmoon closed 9 years ago
6
KeyError in rag.learn_agglomerate(...)

#51 funkey closed 9 years ago
3