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jazdrv
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dnaTools
GNU General Public License v3.0
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Sqldev
#44
jeftreece
closed
6 years ago
0
Sqldev
#43
jeftreece
closed
6 years ago
0
Sqldev
#42
jeftreece
closed
6 years ago
0
Sqldev
#41
jeftreece
closed
6 years ago
0
Sqldev
#40
jeftreece
closed
6 years ago
0
Sqldev
#39
jeftreece
closed
6 years ago
0
Merge branch
#38
jeftreece
closed
6 years ago
0
add -k to show kit info
#37
jeftreece
closed
6 years ago
0
migrate to python logging module
#36
jeftreece
opened
6 years ago
0
fixes surfaced from loading full batch of kits
#35
jeftreece
closed
6 years ago
0
Sqldev
#34
jeftreece
closed
6 years ago
0
move json.out into data directory (from https://github.com/jazdrv/dnaTools/pull/7)
#33
jeftreece
opened
6 years ago
0
Sqldev
#32
jeftreece
closed
6 years ago
0
Sqldev
#31
jeftreece
closed
6 years ago
1
integration of refpos rules into sort.py
#30
jazdrv
closed
6 years ago
3
an idea - use of ISOGG's R tree to create reference tables -- that we can use to prioritize clades and rules, as well as check results
#29
jazdrv
opened
6 years ago
2
Sqldev
#28
jeftreece
closed
6 years ago
0
prototype sort code crashes on trying to print output
#27
jeftreece
closed
6 years ago
3
Sqldev
#26
jeftreece
closed
6 years ago
0
calls with . for derived need to discern what they're negative for (ie: L48)
#25
jazdrv
closed
6 years ago
2
a toggle to see variant id's in the matrix view (or not)
#24
jazdrv
opened
6 years ago
0
aggressive (ambiguous) POS promotions do affect subsequent variant rule processing
#23
jazdrv
opened
6 years ago
2
split detection needs tighter integration with other rule processing results
#22
jazdrv
opened
6 years ago
1
need to be able to prioritize variants within a clade, so priority variants show in matrix (others don't)
#21
jazdrv
opened
6 years ago
3
haplogroup order determination needs to be setup (one of the original feature requests)
#20
jazdrv
opened
6 years ago
1
sort code needs code review
#19
jazdrv
closed
6 years ago
5
a thorough review of matrix data creation, rules processing - is it working right?
#18
jazdrv
opened
6 years ago
0
split detection -> to split (new variant) creation
#17
jazdrv
opened
6 years ago
2
an "explode" format feature for the matrix so can see all clade mates
#16
jazdrv
opened
6 years ago
1
need better tools for quickly getting insight on how variants were assigned POS/NEG in matrix
#15
jazdrv
closed
6 years ago
4
need better tools for discerning clade-mates for matrix's variant entries
#14
jazdrv
closed
6 years ago
3
Iain's not happy with the formatting of the vals in the matrix
#13
jazdrv
opened
6 years ago
0
would like it if -vln, -vli, -vlx, etc switches were consolidated better (and incl stash info)
#12
jazdrv
closed
6 years ago
3
need to setup "unstash" feature + stash status can be seen from reference switch views
#11
jazdrv
closed
6 years ago
1
in proc_chk, splits isn't able to see unk's that are to be promoted to POS
#10
jazdrv
closed
6 years ago
2
Sqldev
#9
jeftreece
closed
6 years ago
0
Sqldev
#8
jeftreece
closed
6 years ago
0
Added new executable "fetch_kits.py"
#7
alvestrand
closed
6 years ago
0
Sqldev
#6
jeftreece
closed
6 years ago
0
age.bed in source dir is not correct for hg38
#5
jeftreece
closed
6 years ago
2
Renamefile
#4
jeftreece
closed
6 years ago
1
Sqldev
#3
jeftreece
closed
6 years ago
0
Extend README install instructions, and add AUTHORS
#2
alvestrand
closed
6 years ago
0
variant table normalization
#1
jeftreece
closed
6 years ago
3