jni pia-tracking issues

jni / pia-tracking

Scripts to work with Pia Larsson's platelet tracking data

BSD 3-Clause "New" or "Revised" License

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issues

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Added a note

#23 jni closed 7 months ago
0
Add example SLURM configuration to dask-jobqueue docs

#22 jni opened 3 years ago
0
Evaluation of tracking accuracy

#21 AbigailMcGovern opened 3 years ago
0
[WIP] Script to edit segmentation to obtain ground truth

#20 AbigailMcGovern closed 3 years ago
1
Update README

#19 AbigailMcGovern opened 3 years ago
0
Try out mastodon for tracking and track editing

#18 jni opened 3 years ago
0
Tracking scripts should be updated to take the nd2 scale and offset parameters into account

#17 jni opened 3 years ago
0
Optimise hyperparameters for btrack (& others) using optuna

#16 jni opened 4 years ago
0
[WIP] Estimating track accuracy

#15 AbigailMcGovern closed 4 years ago
5
Add BSD 3-clause license

#14 jni closed 4 years ago
2
Added install and uninstall scripts + environment file

#13 AbigailMcGovern closed 4 years ago
2
[WIP] Script for tracking with BayesianTracker

#12 AbigailMcGovern closed 4 years ago
8
Develop randomised/blind track quality scoring UI

#11 jni closed 3 years ago
1
Create ND2 and tracks.csv napari plugins

#10 jni closed 3 years ago
1
Update for changes to Tracks PR API

#9 jni closed 4 years ago
5
Previous work on platelet tracking

#8 nikkotinto opened 4 years ago
3
Develop workflow for editing labels to allow quantitative evaluation of accuracy

#7 jni opened 4 years ago
0
Add command line interface for visualisation scripts

#6 AbigailMcGovern closed 4 years ago
1
Try using btrack for tracking

#5 jni opened 4 years ago
2
Try using Cellpose or Stardist for segmentation

#4 jni opened 4 years ago
0
Add more properties to the tracks

#3 jni opened 4 years ago
0
Convert data to ome-zarr

#2 jni opened 4 years ago
0
Make scripts with command-line arguments rather than notebooks with cells

#1 jni opened 4 years ago
0