jsh58 DMRfinder issues - Githubissues

jsh58 / DMRfinder

Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data

MIT License

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combine_CpG_sites sample number issue

#19 Kumahgshin opened 3 months ago
1
Input data for methylation count extraction.

#18 desmodus1984 opened 5 months ago
1
not working on Bismark run with bowtie --local

#17 JHBI115 closed 4 months ago
2
Issue using combine_CpG_sites.py with supplied example

#16 nickyph opened 12 months ago
1
Update findDMRs.r to resolve issue #13

#15 yganwork closed 5 months ago
0
Parallel computing for DMR

#14 Kennyluo4 opened 2 years ago
0
findDMRs.r error

#13 dahun73 opened 3 years ago
9
Multiple Errors with dispersion.shrinkage.BSseq

#12 npatel22526 closed 4 years ago
2
Can I use customized region for finding significant DMR?

#11 Honchkrow closed 4 years ago
2
Is it appliable for analysing Bisulfite sequencing data?

#10 sixone11 closed 5 years ago
2
Error! Missing information for sample "control1.1.fq" from input file combined.csv. Valid sample names are: control1 control2 test1_0 test2_0

#9 sixone11 closed 5 years ago
2
Error in `[<-.data.frame`(`*tmp*`, , !col %in% dss & !substr(col, 1, nchar(col) - : replacement has 0 items, need 10 Calls: [<- -> [<-.data.frame Execution halted

#8 khl0798 closed 5 years ago
2
findDMR

#7 Lux91 closed 5 years ago
9
Manual clustering info

#6 Lux91 closed 5 years ago
2
How can I provide pair information to do pairwise differential methylation analysis?

#5 bishwaG closed 5 years ago
5
What is the issue with bismark >0.15.0

#4 greatfireball closed 6 years ago
2
coverage2cytosine result doesn't fit input format of combine_CpG_sites.py

#3 lixin4306ren closed 6 years ago
0
extract_CpG_data.py issue

#2 jsh58 closed 6 years ago
11
combine_CpG_sites.py issue

#1 svrever closed 6 years ago
20