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jtamames
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SqueezeMeta
A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Stopping in STEP4 —> 04.rundiamond .pl Program finished abnormally
#762
da-gunjan-arya
closed
6 months ago
13
Problems with anvio-load-sqm (in the run-HMMs step)
#761
jahid10
closed
5 months ago
3
Error creating taxid.db, please contact us!
#760
DeniRibicic
closed
6 months ago
4
Died at line 276 in sqm_longreads.pl
#759
FloatingFloss
closed
7 months ago
5
sqm_hmm_reads core dump error
#758
Tetrajf
closed
2 months ago
3
10.mapsamples.pl
#757
zhenzhao123
closed
7 months ago
3
read counts
#756
zhenzhao123
closed
7 months ago
9
"zip file is corrupt" when loading a zipped project into SQMtools
#755
fpusan
opened
7 months ago
1
Benchmark data for HPC cluster
#754
fpeti11
closed
6 months ago
2
i am facing the problem to analysing the Ion Torrent Reads.
#753
vmevada102
closed
6 months ago
11
01.run_all_assemblies.pl. Program finished abnormally
#752
zhenzhao123
closed
6 months ago
3
01.run_assembly.pl (megahit)
#751
zhenzhao123
closed
6 months ago
7
Sample information problem
#750
zhenzhao123
closed
6 months ago
7
The "tax" parameter of the "subsetTax" function could accept list of taxons
#749
glenjasper
opened
7 months ago
3
Should unclassified and unmapped abundances be taken into account during gene abundance normalization?
#748
drbmanna
closed
7 months ago
1
Add the taxonomic category "Kingdom" for eukaryotes
#747
glenjasper
opened
7 months ago
4
STABLE VERSION REQUIRED!!! SQUEEZEMETA
#746
Michaelijesse
closed
8 months ago
1
The pipeline stopped without finishing megahit
#745
feixiang1209
closed
8 months ago
2
sqm_annot.pl fails at splitting Diamond file
#744
gracegyho
closed
5 months ago
5
Input error
#743
lam-c
closed
6 months ago
11
Using sqm_annot.pl, died at line 223
#742
gracegyho
closed
8 months ago
2
Problem with kmer-db installation
#741
gracegyho
closed
8 months ago
5
Can I obtain the latest version of the KEGG database using make.download.pl?
#740
Lafmas
closed
8 months ago
1
sqm_longreads.pl taxonomy calls
#739
mscarbor
closed
7 months ago
3
identify genenames annotated with one database with other.
#738
afsanarupa
closed
7 months ago
4
minimap2 --version Segmentation fault
#737
jayramr
closed
9 months ago
3
Incorporate MetaGeneMark in ORF prediction
#736
tboonf
closed
5 months ago
1
anvio does not go until end
#735
Azimdine
closed
7 months ago
1
problem with SqueezeMeta_conf.pl in anvio
#734
Azimdine
closed
9 months ago
7
Issue with step 6
#733
DrJoshVandenbrink
closed
8 months ago
28
SQM to Phyloseq
#732
megberryman
closed
7 months ago
1
cluster_protein.pl missing and SqueezeMeta.pl missing clustered request in v1.6.3
#731
stonyang
closed
9 months ago
2
Problem with step 10, and step 14
#730
jonaskohh
closed
8 months ago
13
SQMtools version
#729
HannahBenisty
closed
9 months ago
12
Test Data Failure
#728
NLZT
closed
6 months ago
6
Can't find sample file
#727
zhenzhao123
closed
6 months ago
9
Calculating the RPKM value for species and phylum?
#726
lisiruisusan
closed
9 months ago
2
SQMTOOLS PLOTTAXONOMY 45º labels
#725
H1889
closed
10 months ago
3
Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally
#724
Michaelijesse
closed
9 months ago
26
SPECIFICATION ENQUIRY FOR SQUEEZEMETA
#723
Michaelijesse
closed
10 months ago
1
Can you remove outdated flags for metabat2?
#722
mkbwang
closed
9 months ago
3
Can we analyze the fungal function?
#721
yjiakang
closed
10 months ago
2
download_database.pl failed
#720
yjiakang
closed
11 months ago
2
SQMtools subsetTax error
#719
mradz19
closed
7 months ago
4
assembly error
#718
wittney-m
closed
9 months ago
1
Formatting external database
#717
mradz19
closed
9 months ago
1
ERROR: STEP14 -> BINNING & STEP 18 checkM_batch.pl
#716
sogada
closed
11 months ago
7
Problem with $installpath in SqueezeMeta
#715
lichen-fungus
closed
9 months ago
8
Can't open samples file (-s) in /data/00..samples.
#714
lichen-fungus
closed
11 months ago
2
restart
#713
HannahBenisty
closed
9 months ago
14
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