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jtamames
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SqueezeMeta
A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Are the rRNA gene sequences removed?
#712
yjiakang
closed
11 months ago
8
KEGG database
#711
alicegrih
closed
11 months ago
3
How to extract sequences for a specific KEGG ID
#710
mradz19
closed
12 months ago
8
Error in Spades assembly (ver1.6.2 post3)
#709
RIJP-SU
closed
10 months ago
10
Exit code -9
#708
AntonioPuriel
closed
9 months ago
2
Stopping in STEP4
#707
RIJP-SU
closed
12 months ago
13
Faillure : Stopping in STEP18 -> 17.checkM_batch.pl
#706
bbalog87
closed
9 months ago
5
Checking all installs
#705
bioforkgithub
closed
12 months ago
11
STEP10 -> 10.mapsamples.pl failled due to cp command not finding second read pair
#704
bbalog87
closed
1 year ago
3
restart at step 10 question
#703
bresyd
closed
12 months ago
8
Run stopped during step 10 due to missing files
#702
mradz19
closed
1 year ago
0
Using dedupe.sh to identify and remove contigs contained in others (merged mode)
#701
eperezv
opened
1 year ago
2
SQMLite from functional subset with sqmreads2tables.py - All Taxa plotted as "Other"
#700
mscarbor
closed
11 months ago
6
Fresh install of newest version of SqueezeMeta missing almost all python libraries
#699
mradz19
closed
1 year ago
0
Determining the abundance of bins
#698
mradz19
closed
1 year ago
1
Species Abundance with different higher levels of Taxa names
#697
drbmanna
closed
1 year ago
2
04.rundiamond.pl. Program finished abnormally : taxaError: Invalid parameter count for option '--out'
#696
fconstancias
closed
1 year ago
6
STEP10 - frozen at sqm_counter
#695
dgarrs
closed
1 year ago
9
STEP10 -> 10.mapsamples.pl.
#694
kostovci
closed
9 months ago
25
Squeezemeta warning for STEP15
#693
sarpiens
closed
1 year ago
4
Bin issue with metabat2
#692
XC-Zhai
closed
1 year ago
6
LCA_tax/taxid.db not present
#691
lilyyycao
closed
11 months ago
4
TPM count
#690
aalkin2001
closed
1 year ago
1
Help with subsetSQM() for a list of KEGG/PFAM IDs (or a list of genes)
#689
henslerk
closed
1 year ago
12
Error from anvi-load-sqm.py
#688
weishwu
closed
1 year ago
2
Would you change README.md?
#687
Lafmas
closed
1 year ago
1
sqm_longreads yields wrong mcount table
#686
jllavin77
opened
1 year ago
10
Error in dimnames(x) in loadSQM
#685
henslerk
closed
1 year ago
2
Sqm run completed but some steps had error
#684
aalkin2001
closed
1 year ago
9
01.run_all_assemblies.pl.
#683
aalkin2001
closed
1 year ago
7
Inquiry about extracting all the taxa associated with a particular functional database
#682
afsanarupa
closed
1 year ago
4
Stopped in Step 20
#681
Ravi-WSU
closed
1 year ago
4
Step 1: Megahit Issue
#680
Ravi-WSU
closed
1 year ago
3
unable to restart SqueezeMeta
#679
koutnymarek
closed
1 year ago
11
Check: command not found at step 16 and Died at ......./SqueezeMeta.pl line 811
#678
Yliub
closed
1 year ago
12
Missing python library "pysam"
#677
fpusan
closed
1 year ago
15
sqm_reads.pl proceed paired-end reads separately
#676
Aaronwang1013
closed
1 year ago
1
Step 1 crashes no matter what we tried
#675
paleome
closed
1 year ago
10
Error with SqueezeMeta STEP 1
#674
avinashDhar1993
closed
12 months ago
6
No DAS directory
#673
weishwu
closed
1 year ago
3
Step 4 Error - Running Diamond
#672
Ravi-WSU
closed
1 year ago
12
Sample file format for Nanopore reads
#671
Tickdoc2010
closed
1 year ago
1
Checking Progress
#670
Ravi-WSU
closed
1 year ago
1
Assembly error in seqmerge mode
#669
matevzl533
closed
9 months ago
11
NMDS for a single coassembly mode run.
#668
jahid10
closed
1 year ago
1
Error in LoadSQM
#667
afsanarupa
closed
1 year ago
5
VISUALISATION
#666
EorgeKit
closed
1 year ago
8
Database download Issue
#665
paleome
closed
1 year ago
7
Could you explain 'Combining metagenomes and metatranscriptomes with SqueezeMeta' wiki more detail?
#664
Lafmas
closed
1 year ago
1
Is it possible to run sqm_annot.pl with external databases?
#663
PuspenduSardar
closed
1 year ago
8
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