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jtamames
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SqueezeMeta
A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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VISUALISATION
#666
EorgeKit
closed
1 year ago
8
Database download Issue
#665
paleome
closed
1 year ago
7
Could you explain 'Combining metagenomes and metatranscriptomes with SqueezeMeta' wiki more detail?
#664
Lafmas
closed
1 year ago
1
Is it possible to run sqm_annot.pl with external databases?
#663
PuspenduSardar
closed
1 year ago
8
Error in Step4
#662
liuyinan19922
closed
1 year ago
2
SqueezeMeta Step 1 Error: Failing in Megahit Assembly
#661
Ravi-WSU
closed
1 year ago
10
Abundance plots
#660
phlienhart
closed
1 year ago
1
Error occurs when reading inputs
#659
lisiruisusan
closed
1 year ago
2
External database
#658
lisiruisusan
closed
1 year ago
26
Error: plotFunctions with metadata_groups parameter
#657
flsaravia
closed
1 year ago
1
A binning issue
#656
blaizereal
closed
1 year ago
12
Remove outliers when plotting nMDS
#655
pstrud
closed
1 year ago
1
Illegal division by zero
#654
blaizereal
closed
1 year ago
22
Query regarding TPM calculation of KO
#653
drbmanna
closed
1 year ago
5
SQMlite coding error
#652
phlienhart
closed
1 year ago
13
How to specify memory and core parameter in command line?
#651
kittyshady
closed
1 year ago
3
1.6.2
#650
fpusan
closed
1 year ago
0
SQM Tools 1.6.0 compatability with sqm_longreads.pl?
#649
mscarbor
closed
1 year ago
2
SqueezeMeta Takes almost One day at STEP 4
#648
Michaelijesse
closed
1 year ago
3
SQMtools version and numpy
#647
HannahBenisty
closed
1 year ago
3
combining tables of bins from unique folders
#646
croth204
closed
1 year ago
5
Stuck at "solving enviroment"
#645
msanchezr99
closed
1 year ago
5
SQMtools: loadSQM Error
#644
megberryman
closed
1 year ago
12
Error at step 04.rundiamond.pl
#643
jahid10
closed
1 year ago
7
Two -miniden cut-off for same Run
#642
drbmanna
closed
1 year ago
2
Error in subsetORFs
#641
da-shanmugapriya
closed
1 year ago
1
TPM and RPKM calculation inconsistent
#640
mkariush
closed
1 year ago
4
Bin TPM
#639
sheaster
closed
1 year ago
4
Conda recipe conflict - Perl version and dependency conflicts
#638
MicroSeq
closed
1 year ago
6
Stopping in STEP10: Error: No input read files were valid
#637
luciamartinf
closed
7 months ago
2
error at step 4 rundiamond.pl
#636
jahid10
closed
1 year ago
2
GTDB with SqueezeMeta
#635
mscarbor
closed
7 months ago
8
Unknown option 'restart' when restarting a step
#634
jahid10
closed
1 year ago
2
re-start with added options
#633
spongebob22
closed
1 year ago
7
Stats on reads
#632
analopezlopez
closed
1 year ago
2
doublepass post completion
#631
sheaster
closed
1 year ago
5
Can I resume a sqm_longreads.pl run?
#630
jllavin77
closed
1 year ago
2
Issue at Diamond FIle splitting and LCA
#629
vmevada102
closed
1 year ago
5
Getting error in running Squeezemeta
#628
vmevada102
closed
1 year ago
4
error in loadSQM
#627
Nykolazzo72
closed
1 year ago
6
Running flye on fasta.gz
#626
megberryman
closed
1 year ago
5
Having zero variances in the metabat2 depth file leads to less bins
#625
fpusan
closed
1 year ago
1
Argument checking in SqueezeMeta.pl would prevent the use of custom assemblers?
#624
fpusan
closed
1 year ago
1
How to run run sqm_hmm_reads.pl for fastq?
#623
luozhy88
closed
1 year ago
2
mamba install not working
#622
angelovangel
closed
1 year ago
2
KEGG databse version
#621
fconstancias
closed
1 year ago
1
anvi-load-sqm.py : process stops midway and does not create the PROFILES.db
#620
Sneha-bioinfo
closed
2 months ago
5
run sqm_hmm_reads.pl error!
#619
luozhy88
closed
1 year ago
10
minimum contig length can affect memory requirements?
#618
Lafmas
closed
1 year ago
7
Problem with loadSQM in local machine
#617
lokyimandy
closed
1 year ago
6
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