issues
search
jtamames
/
SqueezeMeta
A complete pipeline for metagenomic analysis
GNU General Public License v3.0
357
stars
78
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
error at step 4 rundiamond.pl
#636
jahid10
closed
1 year ago
2
GTDB with SqueezeMeta
#635
mscarbor
closed
9 months ago
8
Unknown option 'restart' when restarting a step
#634
jahid10
closed
1 year ago
2
re-start with added options
#633
spongebob22
closed
1 year ago
7
Stats on reads
#632
analopezlopez
closed
1 year ago
2
doublepass post completion
#631
sheaster
closed
1 year ago
5
Can I resume a sqm_longreads.pl run?
#630
jllavin77
closed
1 year ago
2
Issue at Diamond FIle splitting and LCA
#629
vmevada102
closed
1 year ago
5
Getting error in running Squeezemeta
#628
vmevada102
closed
1 year ago
4
error in loadSQM
#627
Nykolazzo72
closed
1 year ago
6
Running flye on fasta.gz
#626
megberryman
closed
1 year ago
5
Having zero variances in the metabat2 depth file leads to less bins
#625
fpusan
closed
1 year ago
1
Argument checking in SqueezeMeta.pl would prevent the use of custom assemblers?
#624
fpusan
closed
1 year ago
1
How to run run sqm_hmm_reads.pl for fastq?
#623
luozhy88
closed
1 year ago
2
mamba install not working
#622
angelovangel
closed
1 year ago
2
KEGG databse version
#621
fconstancias
closed
1 year ago
1
anvi-load-sqm.py : process stops midway and does not create the PROFILES.db
#620
Sneha-bioinfo
closed
4 months ago
5
run sqm_hmm_reads.pl error!
#619
luozhy88
closed
1 year ago
10
minimum contig length can affect memory requirements?
#618
Lafmas
closed
1 year ago
7
Problem with loadSQM in local machine
#617
lokyimandy
closed
1 year ago
6
pip install?
#616
AlexandreThibodeauUdM
closed
1 year ago
1
CD-HIT taking too long when running in merged mode. Is it as expected?
#615
auroralabastida
closed
1 year ago
6
Analysing multiple metagenomes individually made into contigs
#614
AlexandreThibodeauUdM
closed
1 year ago
3
ways to reduce contamination from a particular taxon
#613
afsanarupa
closed
1 year ago
4
Error at assembly with canu
#612
pedres
closed
1 year ago
6
Advice on rarefying data
#611
mradz19
closed
1 year ago
2
Problem with database download
#610
lokyimandy
closed
1 year ago
7
option parser issue
#609
moritzbuck
opened
1 year ago
1
what is the meaning of percentage in case of subsetting.
#608
jahid10
closed
1 year ago
2
Changing gradient color and font size in plotFunction SQMtools
#607
afsanarupa
closed
1 year ago
9
Bins refinement in anvio
#606
azam17
closed
1 year ago
1
Should the use of external database (CAZY) produce abundance data for heatmap generattion?
#605
afsanarupa
closed
1 year ago
1
large percentage of unclassified taxon from family level.
#604
jahid10
closed
1 year ago
9
Issues at step-10
#603
RPIASRI
closed
1 year ago
7
subsetTax without rescaling TPM
#602
adec37
closed
1 year ago
2
Problem with external database
#601
pedres
closed
1 year ago
4
Restarting back step 10 without overwriting the data
#600
azam17
closed
1 year ago
0
Is it possible to find Antibiotic resistance Genes (ARGs) using Subset or other function?
#599
yasiromics
closed
1 year ago
5
Is it possible running SQM in Merged mode with MinION long reads?
#598
nutrimol
closed
1 year ago
6
Errors in loadSQM
#597
Lafmas
closed
1 year ago
18
Restart from STEP 6. lca.pl
#596
Lafmas
closed
1 year ago
4
Error loading Squeezemeta data into R4.2.2
#595
yasiromics
closed
1 year ago
9
anvi-load-sqm.py: At least one gene call in your external genes file ('5660473') contains a start position smaller than 0
#594
jahid10
closed
1 year ago
5
minimus2,spend 5 days!
#593
luozhy88
closed
1 year ago
2
01.run_assembly.pl. Program finished abnormally
#592
jahid10
closed
1 year ago
2
Restart resumes from step 3 even if step 2 failed
#591
fpusan
closed
1 year ago
1
Unclassified terminology
#590
analopezlopez
closed
1 year ago
2
issue with subsetBins in SQMtools
#589
nutrimol
closed
1 year ago
8
error in anvi-load-sqm.py
#588
fconstancias
closed
1 year ago
4
Error in aggregate.data.frame...
#587
SMOKO2022
closed
1 year ago
6
Previous
Next