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jtamames
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SqueezeMeta
A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Restart resumes from step 3 even if step 2 failed
#591
fpusan
closed
1 year ago
1
Unclassified terminology
#590
analopezlopez
closed
1 year ago
2
issue with subsetBins in SQMtools
#589
nutrimol
closed
1 year ago
8
error in anvi-load-sqm.py
#588
fconstancias
closed
1 year ago
4
Error in aggregate.data.frame...
#587
SMOKO2022
closed
1 year ago
6
sqm_reads.pl fails if -p is set to an absolute path instead of a relative one
#586
fpusan
opened
1 year ago
0
MetaCyc pathways
#585
astromecki
closed
1 year ago
5
can't find nr.db there, or it is corrupted
#584
Yaooo999
closed
1 year ago
3
Stopping in STEP1 -> 01.run_all_assemblies.pl. Program finished abnormally
#583
jahid10
closed
1 year ago
2
Error occurred in the step of 06.lca.pl
#582
sawannee
closed
1 year ago
5
04.rundiamond.pl. Program finished abnormally
#581
sawannee
closed
1 year ago
6
error when trying sqm2itol.pl
#580
nutrimol
closed
1 year ago
14
Query with pipeline
#579
kinosham
closed
1 year ago
2
The database download seems to be stuck in the LCA_tax step
#578
Yaooo999
closed
1 year ago
5
Error in loadSQM
#577
astromecki
closed
1 year ago
3
Large amount of unmapped reads
#576
fpusan
closed
1 year ago
1
SQMtools was installed, however, it doesn't work.
#575
Yunliang81
closed
1 year ago
4
N50 - stats file
#574
analopezlopez
closed
1 year ago
2
Died at /home/bioinfo/anaconda3/envs/SqueezeMeta/bin/sqm2itol.pl line 147.
#573
jahid10
closed
1 year ago
2
could not find function "combineSQM"
#572
jahid10
closed
1 year ago
5
Restart keeps adding sample names at the end of contigs in merged mode?
#571
fpusan
closed
1 year ago
1
unable to load -euk -nobins project in SQMTools
#570
RitaBogorad
closed
1 year ago
10
Stopping in STEP4 -> 04.rundiamond.pl. Program finished abnormally
#569
jahid10
closed
1 year ago
12
can not be able to install due to perl dependency clash
#568
jahid10
closed
1 year ago
1
recommended procedure to explore differences between two conditions in metagenomic samples
#567
JuanmaMedina
closed
1 year ago
1
the result of composition is poor in SqueezeMeta,why?
#566
luozhy88
closed
1 year ago
5
Undefined subroutine &main::error_out called at 01.run_all_assemblies.pl line 231
#565
florekem
closed
1 year ago
7
Problems finding SQMtools v 0.7
#564
mawwwa88
closed
1 year ago
2
Some tax is incomplete.
#563
luozhy88
closed
1 year ago
1
some tax is missing in 19.PJ1.contigtable
#562
luozhy88
closed
1 year ago
3
How to run in hybrid mode and how to pass multiple external assemblies into SqueezeMeta?
#561
gaworj
closed
1 year ago
1
RNA counts
#560
sakcham
closed
1 year ago
7
Run stops at diamond process
#559
sakcham
closed
1 year ago
21
04.rundiamond.pl error while using sqm_annot.pl
#558
PuspenduSardar
opened
1 year ago
8
Step 4 restart, looks for an nonexistent directory
#557
DanCWB
closed
1 year ago
19
process stuck on merging step
#556
jilldv
closed
1 year ago
4
Annotating genomes *sample file*
#555
valde76
closed
1 year ago
1
DAS tool issue (SqueezeMeta v1.5)
#554
pedres
closed
1 year ago
13
Trimmomatic option
#553
luozhy88
closed
1 year ago
11
Why didn't this tool remove the genomic information of the host, such as human or mouse?
#552
luozhy88
closed
1 year ago
8
install error squeezemeta-1.1.0-pl526r36_0 requires perl-dbd-mysql
#551
luozhy88
closed
1 year ago
1
install error squeezemeta-1.1.0-pl526r36_0 requires perl-dbd-mysql
#550
luozhy88
closed
1 year ago
3
test.samples is bad
#549
luozhy88
closed
1 year ago
2
test.samples is bad
#548
luozhy88
closed
1 year ago
1
Error in STEP 14
#547
EorgeKit
closed
1 year ago
12
Running SqueezeMeta Co-assembly by keeping both pair end and single end reads from trimmomatic
#546
drbmanna
closed
1 year ago
5
Taxonomic classification using external Database
#545
fredrickkebaso
closed
1 year ago
2
POSTED UNDER WRONG TOPIC, PLEASE DELETE: Das_Tool does not produce PDF plots
#544
BostjanMurovec
closed
1 year ago
1
Stopping in STEP4 -> 04.rundiamond.pl. Program finished abnormally
#543
irenealdea95
closed
1 year ago
6
Unknown option: restart
#542
BOASE-Kate
closed
1 year ago
3
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