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kbroman
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qtl
R/qtl: A QTL mapping environment
https://rqtl.org
GNU General Public License v3.0
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Updating the mqmgetmodel help page
#60
DannyArends
closed
7 years ago
0
The additive effects of some markers is NA in the bcsft population
#59
jingxianyu
closed
7 years ago
5
Make estimate.map=FALSE the default in read.cross
#58
kbroman
closed
6 years ago
0
read.cross with crosstype="bcsft" doesn't allow sep=";"
#57
kbroman
closed
6 years ago
0
Fixing the duplicate rownames bug by Jesse Weber
#56
DannyArends
closed
7 years ago
1
In read.cross, use data.table::fread rather than read.csv
#55
kbroman
opened
7 years ago
0
Additive effect heatmap
#54
jcberny
opened
7 years ago
3
Directed mqmplot.multitrait?
#53
jcberny
closed
7 years ago
7
pull.argmaxgeno issue (4-way, include.pos.info =T)
#52
jtlovell
closed
7 years ago
1
Problem with write.cross with mapqtl
#51
kbroman
closed
7 years ago
1
scantwopermhk ignores pheno.col argument
#50
Wang-RJ
closed
7 years ago
3
Constraint in forking due to large file
#49
pcarbo
closed
6 years ago
8
trivial typo in error msg
#48
alexwhan
closed
8 years ago
1
documentation for is.cross.with.genoprobs
#47
rcorty
closed
8 years ago
1
"creating" is.cross.R
#46
rcorty
closed
8 years ago
1
Added is.cross, is.f2.cross, and tests
#45
rcorty
closed
8 years ago
4
cim should give error for 4-way cross
#44
kbroman
closed
7 years ago
1
scanonevar and related function
#43
rcorty
closed
8 years ago
4
Get rid of d.f. warnings
#42
kbroman
closed
8 years ago
1
read.cross may reorder chromosomes
#41
kbroman
closed
9 years ago
0
plot.pxg gives error if one genotype group is missing
#40
kbroman
closed
9 years ago
0
stepwiseqtl requires covar argument to be a data frame
#39
kbroman
closed
9 years ago
1
Minor extension to scanonevar()
#38
rcorty
closed
9 years ago
3
allow changing main, xlab and col in plot.pheno
#37
timflutre
closed
9 years ago
0
add sink() before stop() in "write.cross.mq" functions
#36
timflutre
closed
9 years ago
1
write.cross.mq.loc forbids too many cases
#35
timflutre
closed
9 years ago
1
create documentation for scanonevar.meanperm()
#34
rcorty
closed
9 years ago
0
added export for scanonevar.meanperm and scanonevar.varperm
#33
rcorty
closed
9 years ago
0
create documentation for scanonevar.varperm()
#32
rcorty
closed
9 years ago
0
Documentation for scanonevar.meanperm.R
#31
rcorty
closed
9 years ago
0
Update NAMESPACE
#30
rcorty
closed
9 years ago
2
permutation test on mean effect of QTL in vQTL model
#29
rcorty
closed
9 years ago
2
permutations on QTL effect on trait variance
#28
rcorty
closed
9 years ago
0
read.cross for MapQTL format - locus file can't have split lines
#27
kbroman
opened
9 years ago
0
reduce2grid not working with scantwo permutations
#26
kbroman
closed
9 years ago
0
Prevent error caused by passing named arguments to read.cross.tidy
#25
aaronwolen
closed
9 years ago
1
Removing some additional output, which was used for debugging memory leaks
#24
DannyArends
closed
9 years ago
1
mqmaugment uses rand() rather than R's RNG functions
#23
kbroman
closed
9 years ago
1
The start of support for 8-way IRIP designs
#22
rohan-shah
closed
9 years ago
1
Fixed bug in est_map_ri8self, hmm_ri8self.c
#21
rohan-shah
closed
10 years ago
1
Initial commit of read.cross.tidy()
#20
aaronwolen
closed
10 years ago
4
More valgrind errors
#19
kbroman
closed
9 years ago
5
Check that the nb of loci is consistent when loading "MapQTL" files
#18
timflutre
closed
10 years ago
1
malloc error in test_qtl.R
#17
kbroman
closed
10 years ago
1
Mqm valgrind
#16
DannyArends
closed
10 years ago
0
Getting an error in mqmaugment related to the X chromosome
#15
kbroman
closed
10 years ago
2
Updates to the MQM code based on valgrind output
#14
DannyArends
closed
10 years ago
1
add code to read/write data in MapQTL format
#13
timflutre
closed
10 years ago
0
Documentation for sim.cross with 4way seems incomplete
#12
timflutre
closed
10 years ago
2
Updates to fix the marker at the end of the last chromosome bug
#11
DannyArends
closed
10 years ago
3
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