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kjolley
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BIGSdb
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
https://pubmlst.org/software/bigsdb/
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Add placeholder text on query boxes
#1003
kjolley
opened
2 weeks ago
0
The 'Embargo requested' column should not be present in the assembly submission table
#1002
kjolley
closed
2 weeks ago
1
Sequence attribute search in curator interface has plugin buttons that lead to wrong analysis
#1001
kjolley
closed
1 month ago
0
Indicate LINcode of closest matching cgST in sequence query
#1000
kjolley
opened
1 month ago
0
Add seqbin_downloads_require_login option
#999
kjolley
closed
1 month ago
0
Breadcrumb links on permissions page are not complete
#998
kjolley
closed
1 month ago
1
Add option to hyperlink to different address depending on regex of field value
#997
kjolley
closed
1 month ago
0
FastaExport and ProfileExport plugins should respect the values of allele_downloads_require_login and profile_downloads_require_login
#996
kjolley
closed
2 months ago
0
Suggestion on round and lround module of POSIX
#995
abrozzi
closed
2 months ago
1
Check GenomeComparator/SNPsites ref sequence FASTA file
#994
kjolley
closed
2 months ago
0
The isolate select list in Export.pm uses the count of genomes to decide whether to use a scrolling list
#993
kjolley
closed
2 months ago
1
Add option to export LINcode prefixes of specific length
#992
kjolley
opened
2 months ago
0
Chart of core loci y-axis is mislabelled
#991
kjolley
closed
3 months ago
0
Add option to ignore '0' in scheme completion stats
#990
kjolley
closed
3 months ago
1
Some genome submissions can be finalized with invalid assembly filenames uploaded
#989
kjolley
opened
3 months ago
1
Make locus extended attributes accessible for export
#988
kjolley
opened
3 months ago
0
Query_interface_fields table does not have id set as foreign key
#987
kjolley
closed
3 months ago
0
List query box is not populated when used and paging back to first page in a TableQuery
#986
kjolley
closed
4 months ago
0
Add query items to the isolate database non-dashboard contents page righthand sidebar
#985
kjolley
closed
4 months ago
0
Database-specific configuration?
#984
zmeel
closed
4 months ago
2
Add permissions to enable download of private data belonging to other people
#983
kjolley
opened
4 months ago
0
Disable private data inclusion in export by default
#982
kjolley
opened
4 months ago
0
Make private data more obvious in exports
#981
kjolley
closed
4 months ago
0
Add option to disable downloads of private data owned by someone else to which access has been shared
#980
kjolley
opened
4 months ago
0
Add option to disable downloads in a specific database configuration
#979
kjolley
closed
3 months ago
1
Hyperlink schemes on isolate info page to link to their descriptions
#978
kjolley
closed
4 months ago
0
Add option for scannew to only scan records that have passed assembly checks.
#977
kjolley
closed
4 months ago
0
Add option for scannew.pl to not check private records
#976
kjolley
closed
4 months ago
0
Add option to sequence query page to pull closest cgST and nearest matches using LINcodes
#975
kjolley
opened
4 months ago
0
The checkbox when scanning for missing loci is displaced to the wrong column
#974
kjolley
closed
4 months ago
0
IsolateQueryPage improvement
#973
mikelchtermans
closed
4 months ago
2
Add option to schemes table to use cache for maindisplay results
#972
kjolley
opened
5 months ago
0
Allele sequence checkbox occasionally is not automatically checked when an exact match allele is found on web scan
#970
kjolley
closed
2 weeks ago
3
Scheme with analysis=false should not be listed on tag scan page.
#969
kjolley
closed
5 months ago
0
Use multiselect box in plugin field inclusion selection
#968
kjolley
closed
5 months ago
1
Seqbin breakdown as admin on private records using job manager do not show isolate names
#967
kjolley
closed
5 months ago
1
Limit extracted sequences width to 100bp to ensure it lines up with translated sequence
#966
kjolley
closed
5 months ago
0
Have a way of indicating in isolate info and data export that there are multiple sequence tags for a locus
#965
kjolley
closed
3 months ago
0
Labels for year bar chart in dashboard can be too cluttered where multiple years have same value
#964
kjolley
closed
5 months ago
0
Flag dropdown boxes don't appear on tag scan page if there are very few rows and the page doesn't scroll
#963
kjolley
closed
5 months ago
1
Field breakdown does not display Unicode characters correctly in scheme field dropdown boxes
#962
kjolley
closed
5 months ago
0
Make sure query dashboard is generated for Publication breakdown
#961
kjolley
closed
5 months ago
0
Hyperlink PubMed id on publication query results page
#960
kjolley
closed
5 months ago
0
Existing allele tooltip in tag scan page does not display unicode characters correctly
#959
kjolley
closed
5 months ago
1
Add option to automatically flag 'ambiguous read' sequences that are otherwise CDS
#958
kjolley
closed
6 months ago
0
"lround" is not exported by the POSIX module
#957
abrozzi
closed
5 months ago
7
Option to require login for allele and profile downloads from web interface
#956
kjolley
closed
4 months ago
0
Add option to require users be logged in to run jobs that require the job manager
#955
kjolley
closed
6 months ago
0
Unitialized variable error in logs if no entry for weasyprint in bigsdb.conf when running configuration check
#954
kjolley
closed
5 months ago
0
Add option to filter composite fields by database view
#953
kjolley
opened
6 months ago
0
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