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kordk
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torch-ecpg
(GPU accelerated) eCpG mapper
BSD 3-Clause "New" or "Revised" License
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Running MLR module without covariates
#40
harrsha4
opened
2 weeks ago
2
Problem with installation
#39
Tn5871
closed
1 week ago
2
can not install
#38
CTLife
opened
5 months ago
1
Update Cis and Distal Region Analysis Logic
#37
liamgd
opened
8 months ago
3
P-value output precision
#36
kordk
opened
1 year ago
5
corr: Missing column names in output
#35
rituroy
closed
1 year ago
2
mlr --cis: TypeError: can't convert np.ndarray of type numpy.object_
#34
rituroy
closed
1 year ago
1
mlr --cis error: KeyError: "None of ['name'] are in the columns"
#33
rituroy
closed
1 year ago
1
Update documentation
#32
liamgd
closed
1 year ago
2
2D chunking for MLR
#31
liamgd
closed
1 year ago
3
mlr: torch.cuda.OutOfMemoryError error with 20k genes & 20k CpGs
#30
rituroy
closed
1 year ago
6
mlr output name clarification
#29
rituroy
closed
1 year ago
3
Regression full methylation only output option
#28
liamgd
closed
1 year ago
2
Time to freeze the code for internal 'release'
#27
kordk
closed
1 year ago
1
MLR: Not able to reproduce estimates & p-values in R
#26
rituroy
closed
1 year ago
24
Download annotation files for GTP
#25
liamgd
closed
1 year ago
2
Optimize probability function
#24
liamgd
closed
1 year ago
5
tecpg run mlr -p 0.1 should return results with p < 0.1 only
#23
rituroy
closed
1 year ago
1
Region filtration for regression_full.py
#22
liamgd
closed
1 year ago
12
Handling incompleteness in the GTP dataset
#21
liamgd
closed
1 year ago
3
Regression optimization: fastest way to save tensors
#20
liamgd
closed
1 year ago
2
mlr error: IndexError: index 1 is out of bounds for axis 0 with size 1
#19
rituroy
closed
1 year ago
2
Filter P-value Before Dataframe - Regression Full
#18
liamgd
closed
1 year ago
1
Regression Optimization
#17
liamgd
closed
1 year ago
13
MLR - change analysis to use gene expression as the dependent variable
#16
kordk
closed
1 year ago
1
MLR output data and label mismatch
#15
kordk
closed
1 year ago
2
P-value filtering of MLR results
#14
liamgd
closed
1 year ago
1
Implement save chunking for MLR
#13
liamgd
closed
1 year ago
1
Typo in regression_full.py?
#12
kordk
closed
1 year ago
1
Add user option to select CPU only analysis even when GPU present
#11
kordk
closed
1 year ago
1
Linear regression approach
#10
kordk
closed
1 year ago
1
Perform p-value calculation for Pearson correlation rho and add to flattened output
#9
kordk
closed
1 year ago
2
Simulated dataset
#8
kordk
closed
1 year ago
4
Feature: eQTM mapping by region
#7
kordk
closed
1 year ago
7
Report results of GPU
#6
kordk
closed
1 year ago
1
--verbose flag gives error with corr()
#5
kordk
closed
1 year ago
1
--cpu-threads failes when calling 'corr'
#4
kordk
closed
1 year ago
1
Change default output to "flattened".
#3
kordk
closed
1 year ago
1
Select CPU core limit
#2
kordk
closed
1 year ago
1
Log file or directory not created
#1
kordk
closed
1 year ago
1