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kundajelab
/
basepairmodels
MIT License
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Is BPNet appropriate for modeling histone modification ChIP-seq data?
#37
stephenrong
closed
1 month ago
2
Training step fails with undefined variable 'chroms'
#36
gregorydonahue
opened
2 months ago
0
Bump tensorflow-gpu from 1.14 to 2.12.0
#35
dependabot[bot]
opened
1 year ago
0
Bump tensorflow-gpu from 1.14 to 2.9.3
#34
dependabot[bot]
closed
1 year ago
1
Bump numpy from 1.16.4 to 1.22.0
#33
dependabot[bot]
opened
2 years ago
0
Bump tensorflow-gpu from 1.14 to 2.7.2
#32
dependabot[bot]
closed
1 year ago
1
Bump tensorflow-gpu from 1.14 to 2.6.4
#31
dependabot[bot]
closed
2 years ago
1
shap_scores aren't compatible with non-bias models
#30
mlweilert
opened
2 years ago
0
parameter tweaking for Dnase/ATAC-seq data
#29
ChangxuFan
opened
2 years ago
1
shap scores for multi-task
#28
nzhang89
opened
2 years ago
0
Bump numpy from 1.16.4 to 1.21.0
#27
dependabot[bot]
closed
2 years ago
1
Bump tensorflow-gpu from 1.14 to 2.5.3
#26
dependabot[bot]
closed
2 years ago
1
using tensorflow 2
#25
nzhang89
closed
2 years ago
0
Test entire pipeline for chromatin models
#24
zahoorz
opened
2 years ago
0
Test entire pipeline for TF models
#23
zahoorz
opened
2 years ago
0
Test if shap is working fine for all newly created models
#22
zahoorz
opened
2 years ago
0
Add hit scoring feature as new command
#21
zahoorz
opened
2 years ago
0
Update modisco version
#20
zahoorz
opened
2 years ago
2
Integrate new batch generator that combines foreground and background loci
#19
zahoorz
opened
2 years ago
0
Bump tensorflow-gpu from 1.14 to 2.5.1
#18
dependabot[bot]
closed
2 years ago
1
Bump tensorflow-gpu from 1.14 to 2.4.2
#17
dependabot[bot]
closed
2 years ago
1
Replaced quietexception by notraceback
#16
juanelenter
closed
3 years ago
0
[suggestion] Allow the user to give a counts-loss-weight value in input_data.json
#15
mmtrebuchet
opened
3 years ago
0
[suggestion] Remove --stranded and --has-control flags; infer these from input_data.json
#14
mmtrebuchet
opened
3 years ago
0
interpret saves h5 files extremely slowly
#13
mmtrebuchet
closed
3 years ago
2
Interpretation failing due to old deepLIFT version
#12
suragnair
opened
3 years ago
0
Add an option to predict allowing for a bed file of regions to predict
#11
mmtrebuchet
opened
3 years ago
0
[Suggestion] Read in custom architecture and loss functions from command line
#10
mmtrebuchet
opened
3 years ago
1
Option to set number of dilated layers (and sanity check for architecture)
#9
mmtrebuchet
closed
3 years ago
3
Bump tensorflow-gpu from 1.14 to 2.4.0
#8
dependabot[bot]
closed
3 years ago
1
bug in saving counts correlation
#7
manyu90
closed
3 years ago
0
bug in Counts Pearson metric
#6
manyu90
opened
3 years ago
0
Bump tensorflow-gpu from 1.14 to 2.3.1
#5
dependabot[bot]
closed
3 years ago
1
Bump tensorflow-gpu from 1.14 to 1.15.4
#4
dependabot[bot]
closed
3 years ago
1
Installation fails due to tensorflow requirement
#3
jmschrei
opened
3 years ago
1
bedGraphToBigWig error in README example
#2
jmschrei
opened
3 years ago
3
Bump tensorflow-gpu from 1.14 to 1.15.2
#1
dependabot[bot]
closed
3 years ago
1