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Report ALL issues on LIS mines here! Regardless of which mine you found it on!
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Figure out why 5.1.0.3 gene family assignments are broken and fix them.
#120
sammyjava
closed
1 year ago
2
GlycineMine Template Region -> Gene
#119
jd-campbell
closed
1 year ago
1
Require genes exist and gene descriptions exist and contain GO terms
#118
sammyjava
closed
1 year ago
2
Pangene set collections
#117
sammyjava
closed
1 year ago
2
Duplicate genetic markers (in GlycineMine)
#116
sammyjava
closed
1 year ago
3
Two Protein Annotate buttons
#115
sammyjava
closed
1 year ago
2
add to bluegenes the list analysis widgets for posting protein/transcript sequences with gene families to funnotate
#114
adf-ncgr
opened
1 year ago
0
the "shareable URLs" for proteins aren't working?
#113
adf-ncgr
closed
1 year ago
5
List analysis heatmap matrix for gene families
#112
adf-ncgr
closed
11 months ago
6
bluegenes "Copy permanent URL" give link to non-bluegenes mine instances
#111
adf-ncgr
opened
1 year ago
3
Make Solr indexing consistent
#110
sammyjava
opened
1 year ago
0
5.1.0.3 updates
#109
sammyjava
closed
11 months ago
14
Phylonodes with numerical "identifier"
#108
sammyjava
closed
1 year ago
3
lis-annotation: get chromosome/supercontig prefixes from corresponding genus collection README
#107
sammyjava
closed
1 year ago
1
mine sequenceserver way behind on data
#106
sammyjava
opened
1 year ago
0
creating lists from mRNAs triggers error; "transcript" lists work
#104
adf-ncgr
closed
1 year ago
1
external links to phylotrees broken in several senses
#103
adf-ncgr
closed
1 year ago
1
Load publication for all Annotatables
#102
sammyjava
closed
1 year ago
2
put webapp/src/main/resources into submodule
#101
sammyjava
closed
1 year ago
0
go term enrichment and pathway enrichment are not analyzing any genes
#100
sammyjava
closed
1 year ago
1
PhaseolusMine (and probably other) keyword search broken
#99
sammyjava
closed
1 year ago
3
QTL trait ontology terms are getting loaded into (stranded) OntologyAnnotation
#97
sammyjava
closed
1 year ago
1
Enrichment widgets broken
#96
sammyjava
closed
1 year ago
2
Phylonode proteins are getting loaded with space instead of underscore in primaryIdentifier
#95
sammyjava
closed
1 year ago
1
5.1.0.2 updates
#94
sammyjava
closed
1 year ago
9
GeneBarchartDisplayer: color rep groups
#93
sammyjava
closed
1 year ago
0
PeanutBase logo at PeanutMine should point back to PB like the LIS logo does
#92
sdash-github
closed
1 year ago
2
lis-genefamily: process README
#91
sammyjava
closed
1 year ago
0
Bluegenes: phylotree displayer
#90
sammyjava
opened
1 year ago
0
GOTerm report page OntologyAnnotations OUTER join breaks query (fine if switched to INNER joins)
#89
sammyjava
closed
1 year ago
4
Data Categories: GWAS and QTL Studies (not "Other")
#87
sammyjava
closed
1 year ago
1
5.1.0.1 more updates
#86
sammyjava
closed
1 year ago
2
Sequence feature displayer seems to be broken
#85
sammyjava
closed
1 year ago
1
Mines lack PFAM, Gene3D, and PANTHER data
#84
sammyjava
closed
1 year ago
1
Pg errors storing Newick (legume.genefam.fam1.M65K.trees_ML_rooted) and ProteinDomain (interpro)
#83
sammyjava
closed
1 year ago
1
cowpea mine expression display small issues
#82
adf-ncgr
closed
11 months ago
2
5.1.0.1 updates
#81
sammyjava
closed
1 year ago
0
latest build of MedicMine does not include the MtGEA expression data
#80
adf-ncgr
closed
2 years ago
2
Data collections page is janky
#79
sammyjava
closed
1 year ago
0
REST API query with jsonobjects is broken
#78
sammyjava
closed
1 year ago
2
CMap-JS bluegenes tool
#77
sammyjava
opened
2 years ago
0
XinJiangDaYe.gnm1.ann1.RKB9 genes loaded without descriptions
#76
adf-ncgr
closed
2 years ago
5
Medicmine keyword search broken
#75
adf-ncgr
closed
2 years ago
1
choice of type for upload list identifiers should probably always default to Gene
#73
adf-ncgr
closed
2 years ago
1
Use full-yuck on all "stable" URIs
#72
sammyjava
closed
2 years ago
1
Facets not appearing on keyword search results
#71
sammyjava
closed
2 years ago
3
MedicMine: not able to create list of things annotated by GO Term (annotatables)
#70
adf-ncgr
closed
1 year ago
5
5.0.8.1 to-do's
#69
sammyjava
closed
2 years ago
1
production soymine is missing dataset: G1134.gnm1.ann1.4BJM
#68
adf-ncgr
closed
2 years ago
2
5.0.7.3 TO-DOs
#67
sammyjava
closed
2 years ago
14
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