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lorenzo-rovigatti
/
tacoxDNA
A collection of tools for DNA modelling
http://tacoxdna.sissa.it/
GNU General Public License v3.0
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oxDNA to PDB timeout
#43
TorEriksson
opened
2 weeks ago
1
Cadnano ox dna mapping sd 623
#42
tgfrancesco
closed
4 months ago
0
Updated deprecated syntax
#41
ohenrich
closed
1 year ago
0
Bug fix: open file in "wb" mode when print_virt2nuc in `cadnano_oxDNA.py`
#40
RodenLuo
closed
2 years ago
0
support scadnano import
#39
dave-doty
closed
2 years ago
8
Unphysical stretched bond after coarse-graining
#38
swapnilbaral-git
closed
2 years ago
5
Length of an OxDNA unit
#37
thenlevy
closed
2 years ago
2
Problem in sequence adding for CaDNAno --> OxDNA conversion
#36
Prateek1410
closed
2 years ago
1
oxDNA_PDB.py grooving
#35
elija-feigl
closed
2 years ago
1
oxDNA_PDB.py: RMSF data
#34
elija-feigl
closed
2 years ago
0
A problem when convert oxDNA file into pdb file
#33
HollandDove
closed
2 years ago
1
Read NUMBER OF ATOMS and BOX BOUNDS at every checkpoint
#32
ohenrich
closed
3 years ago
0
Read NUMBER OF ATOMS and BOX BOUNDS at every checkpoint
#31
ohenrich
closed
3 years ago
9
Add oxView output option to tiamat script
#30
Akodiat
closed
3 years ago
1
Modified requirement to >= 8 columns
#29
ohenrich
closed
3 years ago
1
Modified requirement to >= 8 columns
#28
ohenrich
closed
3 years ago
0
Modified requirement to >= 8 columns
#27
ohenrich
closed
3 years ago
2
Fix old python2 print in rpoly_oxDNA.py
#26
Akodiat
closed
3 years ago
3
Add oxView output option to rpoly script
#25
Akodiat
closed
3 years ago
0
oxDNA to pdb conversion for looped structures
#24
FionaSander
closed
3 years ago
4
Add oxView output option to cadnano script
#23
Akodiat
closed
3 years ago
2
Bugfix for issue #14
#22
mckwxp
closed
3 years ago
3
Python2 version
#21
ohenrich
closed
3 years ago
3
Generalisation for unique base pairing (LAMMPS ntype > 4)
#20
ohenrich
closed
3 years ago
3
LAMMPS trajectory processing
#19
ohenrich
closed
3 years ago
4
Fixed minor bug in 'correct_for_large_boxes'
#18
mattaq31
closed
4 years ago
0
vHelix_oxDNA.py changes G in C and vice versa
#17
VinceCar
closed
4 years ago
2
Incorrectly labeled flag in the README description of cadnano_oxDNA.py
#16
jcalumba
closed
4 years ago
1
vHelix to oxDNA(beta)
#15
asdxzsa
closed
4 years ago
1
skip: unrecoverably mismatched region length
#14
elija-feigl
closed
3 years ago
1
Allow uracil in pdb converter
#13
Akodiat
closed
4 years ago
1
Cannot set sequence in cadnano_oxDNA.py
#12
FerdinandoR
opened
4 years ago
2
Add files via upload
#11
bensonbits
closed
5 years ago
0
Tiamat converter did not work for the attached file
#10
ErikPoppleton
closed
5 years ago
3
Problems with open chain
#9
antonio-suma
closed
5 years ago
0
parallel vectors diet on XYZ
#8
antonio-suma
closed
5 years ago
1
oxDNA CUDA backend bug when filling cells
#7
khaotik
closed
5 years ago
1
Python script filenames should not contain dash characters ("-")
#6
lorenzo-rovigatti
closed
6 years ago
0
The rule for ACGT and numbers is different in oxdna suite and lammps
#5
antonio-suma
closed
6 years ago
1
check TW-WR value generated from xyz
#4
antonio-suma
closed
1 year ago
0
lammps checks
#3
antonio-suma
closed
1 year ago
0
The writhe-computing function doesn't work for very aligned strands
#2
lorenzo-rovigatti
closed
1 year ago
0
add to xyz to oxdna single strand option
#1
antonio-suma
closed
6 years ago
1