issues
search
lpantano
/
seqcluster
small RNA analysis from NGS data
http://seqcluster.readthedocs.io
MIT License
36
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
s/l/mystats.py: migrate to scipy.stats.binomtest.
#59
emollier
closed
1 week ago
4
MIRALIGNER/question
#58
Alarabi1980
closed
6 months ago
6
Devel
#57
lpantano
opened
8 months ago
0
An error occurred when running the program
#56
charles-xue
opened
10 months ago
4
update main with umi error fix
#55
lpantano
closed
2 years ago
0
fix umi bug
#54
abartlett004
closed
2 years ago
0
Unable to find documentation
#53
SarahLuca
closed
6 months ago
4
fix bug in report making profile with long tail
#52
lpantano
closed
3 years ago
0
possible error with pandas 1.1
#51
lpantano
opened
4 years ago
0
Bioconda -> Github is wrong link
#50
harish0201
opened
4 years ago
0
Questions about using the seqcluster json output for some pipeline analysis
#49
BioinfoHub-PeiQinNg
closed
6 months ago
3
can python dateutils dependency go?
#48
smoe
closed
5 years ago
3
TypeError: 'map' object is not subscriptable
#47
lurebgi
closed
4 years ago
8
More detail in log for make_profile
#46
smoe
closed
5 years ago
5
nosetests is not in source tree
#45
smoe
closed
5 years ago
0
Don't demand local amcharts js library
#44
smoe
closed
5 years ago
0
amchart - redistributable in source tree?
#43
smoe
closed
5 years ago
3
Series of beautifications, typos
#42
smoe
closed
5 years ago
1
Devel
#41
lpantano
closed
5 years ago
0
proressbar new api; lazy output decoding
#40
kkarolis
closed
5 years ago
2
issue in seqcluster prepare
#39
kisun
closed
5 years ago
11
Python 3 support: progressbar2 and list/iterator fixes
#38
chapmanb
closed
5 years ago
3
Python 3 support: use general fixes and six for 2 and 3 support
#37
chapmanb
closed
5 years ago
1
No UMI transform specified, assuming pre-transformed data.
#36
jxshi
closed
5 years ago
5
seqcluster executable not found when testing
#35
smoe
closed
5 years ago
1
Helping transition to Python3
#34
smoe
closed
6 years ago
5
Please clean-up or git-ignore data/examples/miraligner/sim_isomir_unique.fa
#33
smoe
closed
6 months ago
2
python setup.py test - __init__.py argument missing
#32
smoe
closed
5 years ago
4
Explicit paths for modules
#31
smoe
closed
6 years ago
4
First round of Python3 compatibility
#30
smoe
closed
6 years ago
4
running from bcbio pipeline
#29
ahsen1402
closed
6 months ago
7
Unfamiliar output from bcbio
#28
gnvalbuena
closed
6 months ago
3
miRNA annotation with seqcluster from BAM file
#27
svm-zhang
closed
6 years ago
12
error install
#26
wengqi123
closed
6 months ago
8
new alignment tool for srna
#25
lpantano
closed
6 months ago
0
issue in seqcluster collapser
#24
YangZituo
closed
7 years ago
2
Issue with IsomirDataSeqFromFiles
#23
biowizz
closed
7 years ago
4
Permission denied during collapse step
#22
AlexandraBomane
closed
6 months ago
5
Contribution by class
#21
ramaniak
closed
7 years ago
30
problem with "seqcluster report" command
#20
AlexandraBomane
closed
8 years ago
2
problem with "Prepare samples" step
#19
AlexandraBomane
closed
7 years ago
32
miraligner Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1
#18
hmkim
closed
8 years ago
7
Regarding of fastq quality by collapse
#17
hmkim
closed
6 years ago
2
report problem
#16
lpantano
closed
6 months ago
30
metadata_fn in report picks up operating system artifacts
#15
ro6ert
closed
8 years ago
1
IsomirDataSeqFromFiles error
#14
hmkim
closed
8 years ago
1
Collapse
#13
filicado
closed
8 years ago
2
Support for mouse genome
#12
a113n
closed
8 years ago
17
NameError: global name 'gzip' is not defined
#11
sung
closed
9 years ago
3
Add a Bitdeli Badge to README
#10
bitdeli-chef
closed
9 years ago
0
Next