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luntergroup
/
octopus
Bayesian haplotype-based mutation calling
MIT License
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Illegal instruction (install issues)
#131
SemiQuant
closed
3 years ago
8
Update README.md boost version > 1.65
#130
justloggingin
closed
3 years ago
0
platform.linux_distribution() used in install.py is deprecated since python3.5 and removed since 3.8
#129
DaGaMs
closed
4 years ago
1
Build failure on HEAD of develop branch
#128
DaGaMs
closed
3 years ago
12
polyclone haplotype relative abundance
#127
slhogle
closed
4 years ago
4
Problem installing on macOS 10.15.3
#126
nuin
closed
4 years ago
4
<EROR> Haplotype::copy unsorted or overlapping regions provided
#125
bredelings
closed
4 years ago
1
Failed to download forest germline.v0.7.0.forest.gz
#124
satzel
closed
4 years ago
6
Question about genotype call in GVCF
#123
bredelings
closed
3 years ago
3
Fix cmake gmp
#122
bredelings
closed
4 years ago
3
Haplotype::copy unsorted or overlapping regions provided
#121
bredelings
closed
4 years ago
2
install.py fails in `#include <gmp.h>` if `--gmp <gmproot>` specified.
#120
bredelings
closed
3 years ago
8
Malformed VCF file / strange allele format
#119
DaGaMs
closed
3 years ago
3
Typo: 'EROR' for 'ERROR'
#118
JocelynSP
closed
4 years ago
2
Source code mentions pacbio css, but means pacbio ccs?
#117
bredelings
closed
4 years ago
1
How to use gvcf files?
#116
bredelings
closed
4 years ago
13
issue with installation
#115
skatragadda-nygc
closed
4 years ago
5
`std::out_of_range` during call set refinement (after 3 days of runtime 😖)
#114
DaGaMs
closed
3 years ago
6
Exceeding target memory
#113
hpoisner
closed
4 years ago
2
Is there a way to stop/ restart later?
#112
ghost
closed
4 years ago
1
Doubts with polyclone module
#111
evergmillan
closed
4 years ago
2
De novo mutation in cohort
#110
ghost
closed
4 years ago
2
Make forest files more accessible
#109
tfenne
closed
3 years ago
5
Polyclone: change default --organism-ploidy to 1
#108
maciejmotyka
closed
4 years ago
4
gVCF?
#107
ghost
closed
4 years ago
6
All forest files unavailable
#106
ghost
closed
4 years ago
3
Compilation error with gcc 7.3
#105
DaGaMs
closed
4 years ago
4
Bam output in trio mode
#104
ikarus97
closed
4 years ago
8
failed to download forests
#103
ghost
closed
4 years ago
5
Octopus seems to miss calls in high depth regions
#102
ahstram
closed
3 years ago
16
Error running and building Octopus with Boost 1.71.0
#101
nuin
closed
4 years ago
6
Octopus outputs invalid alternate allele
#100
DBS-Max
closed
4 years ago
8
An unclassified error has occurred: Map::at
#99
DiDeoxy
closed
4 years ago
16
How to annotate the resulting VCF?
#98
jlee110
closed
4 years ago
3
std::bad_alloc error
#97
DBS-Max
closed
4 years ago
5
Clarification of genotype calls for somatic calling model
#96
jbedo
closed
4 years ago
7
Slow temporary .bcf header writing
#95
gmagoon
closed
4 years ago
2
Error installing on Debian (multiple versions)
#94
nuin
closed
4 years ago
2
Octopus revision 6f1869d suffers from intermittent segmentation fault issue
#93
ahstram
closed
4 years ago
10
"terminate called without an active exception" error
#92
vlrieg
closed
4 years ago
6
Index file is not recognized
#91
maxulysse
closed
3 years ago
5
Polyclone mode, VCF output, phasing
#90
mherold1
closed
4 years ago
11
ERROR while training random forest
#89
24natasya
closed
4 years ago
5
Add --tentacles as an alias for the --threads
#88
nh13
closed
3 years ago
1
Installation problem on macOS
#87
vlrieg
closed
4 years ago
5
Running Octopus within memory-controlled environment results in Std::bad_alloc with code base after commit 4d4b0f4
#86
ahstram
closed
4 years ago
5
Arguments for data-profile
#85
24natasya
closed
4 years ago
3
question about levels of phasing
#84
ChristopheLegendre
closed
4 years ago
6
Running Octopus on a Cluster
#83
JesseDGibson
closed
4 years ago
2
Converting CSV file from classified calls
#82
24natasya
closed
4 years ago
6
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