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luntergroup
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octopus
Bayesian haplotype-based mutation calling
MIT License
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training data used for the random forest model
#179
msahraeian
closed
3 years ago
1
Cancer model core dumps with std::out_of_range error for _Map_base::at
#178
jbedo
closed
2 years ago
4
vcf filtering failed - VCF file is too big
#177
davidecarlson
closed
3 years ago
4
failed to open temp bcf file
#176
davidecarlson
closed
3 years ago
18
cmake with custom htslib location
#175
jdmontenegro
closed
3 years ago
2
Cohort of low coverage unmatched somatic exome data
#174
njbernstein
closed
3 years ago
2
Variants in which the reference allele has a very low allele fraction are marked for filtering in the cancer model
#173
TBradley27
closed
3 years ago
1
variant position in repeats
#172
cariaso
closed
3 years ago
2
[Error] memory corruption
#171
Sparkle-27
closed
3 years ago
1
[Error] memory corruption
#170
Sparkle-27
closed
3 years ago
0
Octopus fails to run for some samples in an array job on HPC cluster
#169
QingliGuo
closed
2 years ago
1
Encountered an unknown error during calling.
#168
gamzemdn
closed
3 years ago
5
Failed to download forest files
#167
satzel
closed
3 years ago
3
wrong path for input files (container installation)
#166
alxsimon
closed
3 years ago
1
Feature request: single cell calling on a single bam?
#165
cnk113
closed
3 years ago
10
CancerCaller: normal sample is not a valid sample.
#164
gamzemdn
closed
3 years ago
0
Encountered an exception during calling 'std::bad_alloc'
#163
Fred-07
closed
3 years ago
7
Joint somatic variant calling very slow
#162
SebastianHollizeck
closed
3 years ago
6
PS type String in VCF header (0.7.2_develop_7ce50979)
#161
jdm204
closed
3 years ago
1
Installation script is not using the version of git or curl on the path
#160
TBradley27
closed
3 years ago
2
de novo mutation detection using ref from closely related species
#159
JohnsonStev
closed
3 years ago
1
parameter setting for de novo in trio data
#158
Yiguan
closed
3 years ago
11
Boost::filesystem::status: File name too long
#157
Luisitox
closed
3 years ago
11
Incorporating octopus haplotype identification into existing microbial genomics program
#156
MrOlm
closed
3 years ago
4
Option to call a set of know variants in cancer model in addition to classic calling?
#155
alxsimon
closed
3 years ago
4
problem with conda install
#154
Fred-07
closed
3 years ago
6
Polyclone mode and mono-nucleotide repeats
#153
bredelings
closed
3 years ago
2
Work with WGBS Data
#152
jamorrison
closed
3 years ago
2
0.70/0.71 on conda
#151
jdm204
closed
3 years ago
5
free() error with cancer calling model
#150
jbedo
closed
3 years ago
7
Discover_tz_dir failed to find zoneinfo
#149
jbedo
closed
3 years ago
9
Installation failed Can't load generated lib/buildcustomize.pl
#148
soulsurfer51
closed
3 years ago
3
question: use of octopus for mosaic calling
#147
brentp
closed
3 years ago
2
Getting AD information for specific sites
#146
bredelings
closed
3 years ago
3
docker build errors
#145
skatragadda-nygc
closed
3 years ago
6
measure.cpp errors
#144
cameron-jack
closed
3 years ago
4
Failed to download forest from google cloud for v0.6.3-beta
#143
sstadick
closed
3 years ago
2
Incorrect haplotype frequencies with polyclone?
#142
bredelings
closed
3 years ago
7
Haplotype frequencies seem incorrect with polyclone
#141
bredelings
closed
3 years ago
1
AF filter when there are multiple ALT alleles?
#140
bredelings
closed
3 years ago
3
v0.7.0 on conda
#139
sstadick
closed
3 years ago
2
AD allele depth info missing for the reference?
#138
bredelings
closed
3 years ago
8
Compile error on develop with BOOST 1.65
#137
bredelings
closed
3 years ago
4
Making random forest for 0.7.0
#136
DiDeoxy
closed
3 years ago
2
Settings for highly homozygous GBS data.
#135
DiDeoxy
closed
3 years ago
2
Switch PS genotype field type to Integer.
#134
roryk
closed
3 years ago
2
Error: Haplotype is too short for alignment
#133
DiDeoxy
closed
3 years ago
3
Release vs Commit Question
#132
PedalheadPHX
closed
3 years ago
2
Illegal instruction (install issues)
#131
SemiQuant
closed
3 years ago
8
Update README.md boost version > 1.65
#130
justloggingin
closed
3 years ago
0
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