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luntergroup
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octopus
Bayesian haplotype-based mutation calling
MIT License
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somatic calling: inconsistent ploidy
#230
jbedo
opened
2 years ago
5
fix buffer overrun
#229
jbedo
closed
2 years ago
2
Somatic model leads to memory corruption
#228
jbedo
closed
2 years ago
0
Failed to download forest files:germline.v0.7.4.forest.gz and somatic.v0.7.4.forest.gz
#226
pmad-gumed
closed
2 years ago
4
GT calls where DP=0
#225
PfeiferLab
closed
2 years ago
9
Installation error - please advise
#224
sprakashUTH
closed
2 years ago
2
how to select a better qulity variant from Spanning alleles
#223
zhoudreames
closed
2 years ago
2
Variant Calling in Low-Complexity Regions
#222
zhoudreames
closed
2 years ago
5
Population mode with individuals of different ploidy
#221
qhelleu
closed
2 years ago
3
Weird contig issue
#220
salpie
closed
2 years ago
4
Detecting heterozygous germline variants having undergone loss of heterozygosity in tumour samples
#219
TBradley27
opened
2 years ago
1
Documentation contains many broken links to the old wiki
#218
jbedo
closed
2 years ago
1
Variant calling in population mode (Questions)
#217
Danisov
closed
2 years ago
10
How should the alt alleles *,* be interpreted here
#216
sstadick
closed
2 years ago
1
Spanning deletions
#215
azzaea
closed
2 years ago
3
BadRegion error
#214
brentp
closed
2 years ago
8
Variant calling in population mode with vcf format file.
#213
Talo07
closed
2 years ago
0
Wrong number of AC fields for multiallelics, cannot split using bcftools
#212
mvelinder
closed
2 years ago
2
Question: MNV detection / trio analysis
#211
Talo07
opened
2 years ago
8
LBQ filter on all somatic variant in UMI cancer paired data
#210
X-Mialhe
opened
2 years ago
2
question: trio mode for larger families
#209
brentp
closed
2 years ago
7
Installation error: moving a local object in a return statement prevents copy elision
#208
svm-zhang
closed
2 years ago
1
False Negative de novo - trio ?
#207
husamia
closed
2 years ago
25
Hints on adding refcall POSITIONAL support to polyclone?
#206
bredelings
opened
2 years ago
15
Segmentation fault trio
#205
husamia
closed
2 years ago
1
Cancer caller hangs waiting on a futex
#204
lordkev
opened
2 years ago
8
What should I do when i want to polishing Assembly by mapping self-IlluminaReads?
#203
zhoudreames
closed
2 years ago
1
Error during trio variant calling and a question about --very-fast and --fast
#202
rabiafidan
closed
2 years ago
2
Adding a version tag of the Docker Image on DockerHub
#201
tinyheero
closed
2 years ago
2
somatic benchmark variants are missing for cancer calling model with tumor only bam file
#200
ctom442021
closed
2 years ago
2
Segmentation fault during trio variant calling
#199
PfeiferLab
opened
2 years ago
3
Are there some option to reduce temporary vcf file number?
#198
xiekunwhy
opened
2 years ago
3
Install Guide Centos 7 for cluster admins
#197
HansBartelmess
closed
2 years ago
19
Q: Work for long reads data?
#196
zhengzhenxian
closed
2 years ago
4
Overlapping Paired-end Reads and their Contribution to Allele Depth
#195
tinyheero
closed
2 years ago
3
Vcf format
#194
gmykim
closed
2 years ago
1
Possible stalling after "_Map_base::at" errors
#193
sivico26
closed
3 years ago
4
Q: Tumor only variant calling
#192
kokyriakidis
closed
2 years ago
1
BQSR recommendation
#191
sivico26
closed
3 years ago
2
mask-soft-clipped-bases option and local realignment
#190
delafoy
closed
3 years ago
1
conda installation
#189
KamilSJaron
closed
3 years ago
2
Merging VCFs v4.3
#188
tahashmi
closed
3 years ago
1
Errors when running hap.py on Octopus generated VCF file
#187
tahashmi
closed
3 years ago
4
Is there a CWL or NF-Core version of octopus script available?
#186
ksarathbabu
closed
2 years ago
1
Memory limit on single cell variant calling?
#185
cnk113
closed
2 years ago
20
`--refcall` has no effect with polyclone?
#184
bredelings
opened
3 years ago
3
DP very low compared to other callers
#183
ptranvan
closed
3 years ago
6
Unclassified error at start of indel profiler
#182
beanurn
closed
3 years ago
3
Issue with conda
#181
ptranvan
closed
3 years ago
6
Fail to run octopus 0.7.4 on two different HCC installed from anaconda
#180
margrzy7
closed
3 years ago
4
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