mahulchak quickmerge issues

mahulchak / quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

GNU General Public License v3.0

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issues

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Program runs, but doesn't provide correct output

#73 drew-olson-tmru opened 1 year ago
2
Aborted (core dumped) quickmerge

#72 chenzhaozhu opened 1 year ago
5
core dump at final step

#71 rwhetten opened 1 year ago
3
Quickmerge fails to set its PATH internally

#70 neoformit opened 2 years ago
6
Fix URL for g3 and add DOI into the README text

#69 hyphaltip closed 2 years ago
0
terminate called after throwing an instance of 'std::out_of_range'

#68 wzhangahas closed 2 years ago
7
sometimes quick merge does not merge contigs?

#67 zmz1988 opened 2 years ago
3
Output problems

#66 Mondlii opened 3 years ago
2
Is there a history of merges not included in anchor_summary.txt?

#65 mu-bio opened 3 years ago
1
quickmerge aborted

#64 khush876 opened 3 years ago
8
[Mac] Running merge_wrapper.py in conda : No such file or directory: 'nucmer': 'nucmer'

#63 RxLoutre opened 3 years ago
3
Confusion about argument ```-l``` and ```-ml```

#62 neptuneyt opened 3 years ago
3
segment fault and Core dump

#61 longzhangnation opened 3 years ago
3
Problem with Reference and Query

#60 phrh opened 3 years ago
0
Is there any problem to use quickmerge and give in input a previous output of quickmerge?

#59 phrh closed 3 years ago
0
quickmerge: terminate called after throwing an instance of 'std::out_of_range'

#58 phrh closed 3 years ago
6
Quickmerge before or after haplotype purging for high heter rate plant assemblies?

#57 xiekunwhy opened 4 years ago
1
Does running iterations of quickmerge on quickmerge output create artifacts?

#56 000generic opened 4 years ago
3
ERROR: mummer and/or mgaps returned non-zero

#55 cjchen5 opened 4 years ago
0
quickmerge ( multiple long-read only ) + ( multiple hybrid ) assemblies

#54 000generic opened 4 years ago
0
Unexpected sequence in merged fasta

#53 mrvollger closed 4 years ago
2
Update README.md

#52 thanhleviet closed 4 years ago
0
bioconda version

#51 Yedomon closed 4 years ago
2
merged fasta is empty - where to look to troubleshoot?

#50 devonorourke closed 4 years ago
6
Is there a way to run quickmerge wrapper in multi-threads?

#49 ShuChen1986 opened 4 years ago
3
About option: -c

#48 MikaUhr closed 4 years ago
16
hybrid assembly

#47 mictadlo opened 4 years ago
1
core dumped: terminate called after throwing an instance of 'std::invalid_argument'

#46 Yunxia-li opened 4 years ago
3
fatal error: iostream: No such file or directory

#45 haiyang-li opened 4 years ago
4
HELP!!!!!!terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_S_construct null not valid

#44 sneupane01 opened 4 years ago
7
Query/reference OR donor/acceptor OR hybrid/self OR hybrid/pacbio

#43 rsharris opened 4 years ago
3
Segmentation fault with larger heterozygous input

#42 ViriatoII closed 4 years ago
1
terminate called after throwing an instance of 'std::out_of_range' what(): basic_string::substr: __pos (which is 1047464) > this->size() (which is 0) Aborted

#41 nrayamaj opened 5 years ago
6
Reg: mummer's newer version and alternatives

#40 harish0201 closed 5 years ago
3
merge_wrapper.py run errors

#39 TRGOLLA opened 5 years ago
4
Possible reason for the following big scaffold got discarded

#38 liu-xingliang opened 5 years ago
4
make clean required for 0.2

#37 jfass opened 5 years ago
1
terminate called after throwing an instance of std invalid argument

#36 mastermindchr opened 5 years ago
7
terminate called after throwing an instance of 'std::logic_error'

#35 ptranvan closed 5 years ago
11
Code: fix merge_wrapper.py

#34 nlapalu opened 5 years ago
1
BUG for int type range

#33 zhk2017 opened 5 years ago
3
Error : Multiple query file is only supported with the SAM output format

#32 jnarayan81 closed 5 years ago
2
better naming of output (intermediate) files

#31 lsterck closed 5 years ago
1
maximum reference limited

#30 huangziyan11111 opened 5 years ago
2
Add --version or -V flag

#29 tseemann closed 5 years ago
3
Where have all the buscos gone?

#28 EarlyEvol opened 6 years ago
13
'std::out_of_range' error

#27 zfuller5280 closed 4 years ago
18
the result

#26 wenjiexiaomeng closed 6 years ago
5
merged.fasta the same as hybrid_assembly.fasta

#25 peterdfields closed 6 years ago
11
Increasing contiguity further

#24 jaworskicoline closed 6 years ago
2