malariagen pf-haploatlas issues

malariagen / pf-haploatlas

MIT License

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issues

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Allow Haplotype UpSet plot central panel to not only show sample's population/location, but any metadata field

#36 Chiyun-Lee opened 1 day ago
0
Frontend adapts to metadata (in preparation for Pv5)

#35 Chiyun-Lee opened 2 weeks ago
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Provide whole gene haplotype sequences

#34 Chiyun-Lee opened 2 months ago
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Finalising cookie implementation

#33 Chiyun-Lee closed 2 months ago
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showing cookie banner only if cookies not previously accepted

#32 Chiyun-Lee closed 2 months ago
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cookies always active

#31 Chiyun-Lee closed 2 months ago
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injecting tag earlier

#30 Chiyun-Lee closed 2 months ago
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modifying gtag main.js

#29 Chiyun-Lee closed 2 months ago
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Pushing changes to live

#28 Chiyun-Lee closed 3 months ago
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Pushing latest changes to dev for testing

#27 Chiyun-Lee closed 3 months ago
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Joint haplotype calls

#26 Chiyun-Lee opened 3 months ago
1
More integrated interpretations of resistance phenotypes within visualisations

#25 Chiyun-Lee opened 3 months ago
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Include non-falciparum species annotation alongside lab strain annotations

#24 Chiyun-Lee opened 3 months ago
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added streamlit-plotly-events2 and fixed dhps bug

#23 Chiyun-Lee closed 4 months ago
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Bump numpy from 1.21.4 to 1.22.0

#22 dependabot[bot] closed 4 months ago
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Tidying up

#21 Chiyun-Lee closed 4 months ago
1
Removing Pillow from requirements.txt

#20 Chiyun-Lee closed 4 months ago
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Security vulnerabilities detected in Pillow

#19 leehart closed 4 months ago
1
investigated isoforms

#18 Chiyun-Lee closed 5 months ago
1
Clean unused repo files

#17 nw20 closed 5 months ago
1
Rerun backend for 1st isoform haplotypes

#16 nw20 closed 5 months ago
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Allow users to query any arbitrary locus of the genome

#15 Chiyun-Lee closed 4 months ago
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resolving a few bugs

#14 eselimnl closed 5 months ago
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Improve plotly-streamlit chart interactions

#13 Chiyun-Lee closed 3 months ago
1
Allow for more granular URL args, e.g., store haplotype selection in URL

#12 Chiyun-Lee opened 5 months ago
0
Generate data using the ancestral allele and not 3D7

#11 Chiyun-Lee opened 5 months ago
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Offer 3D PDB/AlphaFold structures

#10 Chiyun-Lee opened 5 months ago
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Option to plot Haplotype UpSet plot with an additional cumulative proportions data track

#9 Chiyun-Lee opened 5 months ago
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Ability to modify the genetic background of the haplotypes

#8 Chiyun-Lee opened 5 months ago
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Rewrite the code to run from zarr, not VCF

#7 Chiyun-Lee opened 5 months ago
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Ability to include QC-failed samples for analysis

#6 Chiyun-Lee opened 5 months ago
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Ability to include indels as part of amino acid haplotypes

#5 Chiyun-Lee opened 5 months ago
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Ability to show nucleotide-level haplotypes, and not just amino acid haplotypes

#4 Chiyun-Lee opened 5 months ago
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Ability to group locations in the abacus and world map plots

#3 Chiyun-Lee opened 5 months ago
0
Ability to introduce phaseable heterozygous samples for analysis

#2 Chiyun-Lee opened 5 months ago
1
Ability to analyse individual mutations and not just haplotypes

#1 Chiyun-Lee opened 5 months ago
0